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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttctctcaattctcgcttccttcgatcctttaatctcatttttcaattttctttgttgtaattgtatcag

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136174|gb|BU926684.1|BU926684
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|298199419|gb|HO042782.1|HO042782
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGCTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|298190319|gb|HO032440.1|HO032440
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|193316754|gb|FK279502.1|FK279502
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|26058966|gb|CA801880.1|CA801880
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|151406328|gb|EV276143.1|EV276143
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGTCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|254319823|gb|GR830847.1|GR830847
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|7458586|gb|AW666036.1|AW666036
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
EST: gi|298196568|gb|HO041311.1|HO041311
EST:     GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG                         GAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA
genomic: GCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAGgtactccttc ... attgtatcagGAAGGTTCTAAGAGAAGCTGCTAGTGGCGGACGGGAAGCAGAACGCGTCAA