Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcaattccaattctatgcactttgattcttttaatttttccgtaaaatttgttgtttacggttatggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136174|gb|BU926684.1|BU926684
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|298199419|gb|HO042782.1|HO042782
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|298190319|gb|HO032440.1|HO032440
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|193316754|gb|FK279502.1|FK279502
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|26058966|gb|CA801880.1|CA801880
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|151406328|gb|EV276143.1|EV276143
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|254319823|gb|GR830847.1|GR830847
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|7458586|gb|AW666036.1|AW666036
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|298196568|gb|HO041311.1|HO041311
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCT
EST: gi|192298917|gb|FG987662.1|FG987662
EST:     TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAG                         ATGGTTGCAGTGGATTCG
genomic: TGAAGATCGTTCGGAAAGACCTCGTACCCAATGGACCTGGCAGCGTTAAGgtgcaattcc ... tggcatgcagATGGTTGCAGTGGATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgattcttttaatttttccgtaaaatttgttgtttacggttatggcatgcagATGGTTGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACCTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG
         ttttaat  putative branch site (score: 3)
         ttttaatttttccgta  TA-rich tract