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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctctctctctattgtaagatatcagtgaatgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG

Basic information

species Glycine max
transcript GLYMA20G36200.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208341582|gb|GE136674.1|GE136674
EST:     TTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: TTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|26058966|gb|CA801880.1|CA801880
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAA
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|151406328|gb|EV276143.1|EV276143
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTT
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTT
EST: gi|254319823|gb|GR830847.1|GR830847
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGA-TGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         A
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtag-
EST: gi|18040102|gb|BM308396.1|BM308396
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         A
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ccttttgtag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
                                   catcctcctccctttt  CT-rich tract
        aataatttgaatgata  TA-rich tract