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...atgctaaatctgtgtaaattatttcccccctcaagtcatagtttggttctcttctttgctttggttgccaatgcttacttttatctttcttaatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGAAG
species | Glycine max |
transcript | GLYMA20G02570.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|19346117|gb|BM890997.1|BM890997
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|193651309|gb|FK599016.1|FK599016
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|9987734|gb|BE661842.1|BE661842
genomic: GGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: AAGTGGGGACAAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTTCAG GCCAAATACCTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAAGCEST: gi|16349067|gb|BI974662.1|BI974662
genomic: A-GTGGGGACAA-GCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCA-GC
EST: GACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|192328617|gb|FK020807.1|FK020807
genomic: GACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|298188362|gb|HO035055.1|HO035055
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCAGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|4313841|gb|AI460960.1|AI460960
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|192295612|gb|FG990466.1|FG990466
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGEST: gi|151403392|gb|EV273202.1|EV273202
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
EST: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG GCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
genomic: GAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAGgtaaatacat ... taatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCG
gttctcttctttgctttggttgccaatgcttacttttatctttcttaatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGAAG
cttacttttatctttc CT-rich tract
ttacttttatctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctaaatctgtgtaaattatttcccccctcaagtcatagtttggttctcttctttgctttggttgccaatgcttacttttatctttcttaatattcagGCCAAATACGTATGTGTTGATGGAGATGGAACAGTTCCTATAGAATCAGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -atctgtg
- - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - -caagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatgc