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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCTCGCAAGTTAAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctctatcaattctttggatgtaccatggttacccttgaaatggtatttgtgaagtgtattaagaatggactagtggatacaagtaggtatttataattcttttggaaatatatgaccaactgatcatcactttgcataactattattctgcag

Basic information

species Glycine max
transcript GLYMA20G02570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02570.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G19860.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAACAAAACATGGGAGATTCTGTCTTCTGCCAAACTTCCCTCGCAAGTTAAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctctatcaattctttggatgtaccatggttacccttgaaatggtatttgtgaagtgtattaagaatggactagtggatacaagtaggtatttataattcttttggaaatatatgaccaactgatcatcactttgcataactattattctgcag
|  |||||||   | |  |  |  | |||||||| || ||  || |||||||||| || ||||| |||||||||| ||| || || ||||||||||||||||||    ||||       ||| || ||  ||  |||||   |||     | || ||  |   | ||  |  |   |||        || | |  ||||||| |       | |                                              
CTCACAAAACCAAGCAAGTATTAGCCTCTGCCAAGCTGCCTCCGAAAGTTAAATTCTATAACATATATGGGACCAATCTAGAAACCCCTCATAGTGTTTGgtaatatttctag------ttttgaggtctca--gttac---tgagtgtttcttcgtacaacttgtttcgctttttcta--------aatttg--atttatattctccgctgcag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254349193|gb|GR859999.1|GR859999
EST:     ATTTTAC-ACATTTATGGGACCAGTCCTTGAGACACCTTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: ATTTTACAACATTTATGGGACCAGT-CTTGAGACACC-TCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|19346117|gb|BM890997.1|BM890997
EST:     CACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: CACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|9987734|gb|BE661842.1|BE661842
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAAGTGGGGACAAAGCCTGTCACAGATCTGCAACAGTTACGTTAT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAA-GTGGGGACAA-GCCTGTCACAGATCTGCAACAGTTACGTTAT
EST: gi|192328617|gb|FK020807.1|FK020807
EST:     AACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|298188362|gb|HO035055.1|HO035055
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCAGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|4313841|gb|AI460960.1|AI460960
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|192295612|gb|FG990466.1|FG990466
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|151403392|gb|EV273202.1|EV273202
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT