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...tctctccagtgtatctatcttttggctattggtaggtagtatgatttcccacaatcctaaggataaggtctctaacaagtatttaaccatatgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGT
species | Glycine max |
transcript | GLYMA20G02570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGGAAAGACGCTNTTTGGTTTTGGATATGATTNTCGCCAAAGCAACAG GTTGCAGGAAACAATGGATCGGEST: gi|12690072|gb|BG156408.1|BG156408
genomic: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAGgtacctaatt ... atgaaattagGTTGCAGGAAACAATGGATCGG
EST: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAG GTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAAEST: gi|120495290|gb|EH223457.1|EH223457
genomic: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAGgtacctaatt ... atgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAA
EST: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAG GTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAAEST: gi|213592442|gb|DB971612.1|DB971612
genomic: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAGgtacctaatt ... atgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAA
EST: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAG GTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAA
genomic: GAGGGAAAGACGCTTTTTGGTTTTGGATATGATTTTCGCCAAAGCAACAGgtacctaatt ... atgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAA
ttcccacaatcctaaggataaggtctctaacaagtatttaaccatatgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGT
taacaagtatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctccagtgtatctatcttttggctattggtaggtagtatgatttcccacaatcctaaggataaggtctctaacaagtatttaaccatatgaaattagGTTGCAGGAAACAATGGATCGGTTGGCTGCAAAGTTAGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tctctcc
- - - - - - - - - - - - gctattg