1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatctcataagcttctcatatcagttttgatctattttgtagtttccatttaatctaatcatatatatttgtcaatttatgatttatacacttgagtcttggaatttatctgctgctgtaacatgtgttcatttttgttcatgtctttttcag
species | Glycine max |
transcript | GLYMA20G02570.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGAT ATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGEST: gi|120495290|gb|EH223457.1|EH223457
genomic: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
EST: TTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAAGCGAT ATTTTTGAGAAATATGTTACGAATTGGGTTGCAATTTGTGCGCCATTCCAEST: gi|209710530|gb|BW662066.1|BW662066
genomic: TTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAA-GCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCA
EST: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGAT ATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
genomic: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATCAATTTATAATGCTGCAGGAGGGAAGAAAATAAACATTATAACTCATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatctcataagcttctcatatcagttttgatctattttgtagtttccatttaatctaatcatatatatttgtcaatttatgatttatacacttgagtcttggaatttatctgctgctgtaacatgtgttcatttttgttcatgtctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG