1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttcttcactgaaataatttgtgttctgtgctgacgagtgtgctgtaagaaactgactttggcgatcttaacctacctaataatctattttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAGGCATGGACTCCATGCAATTGATATTTTGGACCCTGACTTG
species | Glycine max |
transcript | GLYMA20G02570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCG GAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAEST: gi|213590960|gb|DB973743.1|DB973743
genomic: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCGgtaggaccta ... ttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
EST: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCG GAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAEST: gi|209709451|gb|BW681180.1|BW681180
genomic: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCGgtaggaccta ... ttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
EST: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCG GAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAEST: gi|120495290|gb|EH223457.1|EH223457
genomic: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCGgtaggaccta ... ttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
EST: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCG GAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAEST: gi|213592442|gb|DB971612.1|DB971612
genomic: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCGgtaggaccta ... ttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
EST: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCG GAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
genomic: CGAGTACACGCTCAAGACCAAGCTTTGGTCGCGTTACGATCCTTCCACCGgtaggaccta ... ttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATA
gtaagaaactgactttggcgatcttaacctacctaataatctattttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAGGCATGGACTCCATGCAATTGATATTTTGGACCCTGACTTG
tctatttt CT-rich tract
taataatctattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttcactgaaataatttgtgttctgtgctgacgagtgtgctgtaagaaactgactttggcgatcttaacctacctaataatctattttgaaaacagGAAAAACCGAGTCCATGGATCCAAATTCAAGAATTATGGTTCCTGAAGATAGGCATGGACTCCATGCAATTGATATTTTGGACCCTGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -cactgaa
- - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - gagtgtg
- - - - - - - - - - - - - - - - - - - - - -ctgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gactttg