Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcctctatcaattctttggatgtaccatggttacccttgaaatggtatttgtgaagtgtattaagaatggactagtggatacaagtaggtatttataattcttttggaaatatatgaccaactgatcatcactttgcataactattattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG

Basic information

species Glycine max
transcript GLYMA20G02570.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254349193|gb|GR859999.1|GR859999
EST:     ATTTTAC-ACATTTATGGGACCAGTCCTTGAGACACCTTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: ATTTTACAACATTTATGGGACCAGT-CTTGAGACACC-TCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|19346117|gb|BM890997.1|BM890997
EST:     CACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: CACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|9987734|gb|BE661842.1|BE661842
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAAGTGGGGACAAAGCCTGTCACAGATCTGCAACAGTTACGTTAT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAA-GTGGGGACAA-GCCTGTCACAGATCTGCAACAGTTACGTTAT
EST: gi|192328617|gb|FK020807.1|FK020807
EST:     AACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|298188362|gb|HO035055.1|HO035055
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCAGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|4313841|gb|AI460960.1|AI460960
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|192295612|gb|FG990466.1|FG990466
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
EST: gi|151403392|gb|EV273202.1|EV273202
EST:     AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTG                         CTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT
genomic: AAATTTTACAACATTTATGGGACCAGTCTTGAGACACCTCATAGTGTTTGgtaaggcctc ... tattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttggaaatatatgaccaactgatcatcactttgcataactattattctgcagCTTTGGAAGTGGGGACAAGCCTGTCACAGATCTGCAACAGTTACGTTATTTCCAG
                                   gcataac  putative branch site (score: 3)
                                            ttattct  putative PPT
                                     ataactattattct  TA-rich tract