Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacacatctcataagcttctcatatcagttttgatctattttgtagtttccatttaatctaatcatatatatttgtcaatttatgatttatacacttgagtcttggaatttatctgctgctgtaacatgtgttcatttttgttcatgtctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG

Basic information

species Glycine max
transcript GLYMA20G02570.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690072|gb|BG156408.1|BG156408
EST:     ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGAT                         ATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
genomic: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
EST: gi|120495290|gb|EH223457.1|EH223457
EST:     TTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAAGCGAT                         ATTTTTGAGAAATATGTTACGAATTGGGTTGCAATTTGTGCGCCATTCCA
genomic: TTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAA-GCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCA
EST: gi|209710530|gb|BW662066.1|BW662066
EST:     ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGAT                         ATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG
genomic: ATTCTATGGGCGGTCTTTTGGTGAAATGTTTCATGTGCCTGCAAAGCGATgtaacacatc ... tctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaatttatctgctgctgtaacatgtgttcatttttgttcatgtctttttcagATTTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG
                 ctgtaac  putative branch site (score: 3)
                                       ttcatgtctttttc  putative PPT
                             ttcattttt  TA-rich tract