1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatcatctgtattgttttagctacttaggggtctcttaatttttgttttgccacagaaaagtgcataatggtgtagttgtacttgtacattgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
species | Glycine max |
transcript | GLYMA20G02570.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG GTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGEST: gi|9987734|gb|BE661842.1|BE661842
genomic: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGG
EST: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG GTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGEST: gi|151403392|gb|EV273202.1|EV273202
genomic: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGG
EST: GAGAAATGTGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG GTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGEST: gi|209710530|gb|BW662066.1|BW662066
genomic: GAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGG
EST: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGG GTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGG
genomic: TTTTGAGAAATATGTTAAGAATTGGGTTGCAATTTGTGCGCCATTCCAGGgtaagtaatt ... tgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGG
ttttgccacagaaaagtgcataatggtgtagttgtacttgtacattgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
ttgttct CT-rich tract
ataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcatctgtattgttttagctacttaggggtctcttaatttttgttttgccacagaaaagtgcataatggtgtagttgtacttgtacattgttctgcagGTGCACCAGGAACCATCAATTCTACCTTTTTAAATGGAATGTCATTTGTGGAAGGATGGGAACAAAACTTTTATATTTCCAAATGGAGCATGCACCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -catctgt
- - - - - - - - - -gctactt
- - - - - - - - - - - - - - - - - - - - - - - - - ccacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtac