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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaagaattctttgataatatctgattttggtttggaatctgcatggcaatagtatattaagtgtgtgtttgttttcacgtttatttccacgttg...

Basic information

species Glycine max
transcript GLYMA18G47960.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726744|gb|AW311098.1|AW311098
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|9258099|gb|BE346246.1|BE346246
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|298188014|gb|HO031971.1|HO031971
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAG
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAG
EST: gi|192305184|gb|FG993950.1|FG993950
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|192305183|gb|FG993949.1|FG993949
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAG-AAAGACACCTGCCCCAGG
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGG
EST: gi|209725123|gb|BW663063.1|BW663063
EST:     TTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACTCCTGCCCCAGGTCAGGCTGTATACTC
genomic: TTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|11117943|gb|BF219536.1|BF219536
EST:     AAGCNCNNNGCNNNTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|18848709|gb|BM567821.1|BM567821
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|254342710|gb|GR858872.1|GR858872
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC
EST: gi|209725122|gb|BW663062.1|BW663062
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAG
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAG
EST: gi|6724680|gb|AW309013.1|AW309013
EST:     AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT                         GATGAGTAGTGCAGCAGGAAAGACACCTGCCCCANGTCAGGCTGTATACTC
genomic: AAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaag ... tttactatcaGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCAGGTCAGGCTGTATACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGTggtacacaagaattctttgataatatctgattttggtttggaatctgcatggcaatagtatattaagtgtgtgtttgttttcacgtttatttccacgttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG