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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttacatgaatgaatgagatgcacacacttgatttcctcattcttcgtgtcttaaataaatgactttgtcttttcaatgtttcgtttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT

Basic information

species Glycine max
transcript GLYMA18G47960.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726744|gb|AW311098.1|AW311098
EST:     GCCAAGAGATTTAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: GCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|298188014|gb|HO031971.1|HO031971
EST:     TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|192305183|gb|FG993949.1|FG993949
EST:     TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|16347967|gb|BI973562.1|BI973562
EST:     TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|10845691|gb|BF071167.1|BF071167
EST:     TCACTTTGATGTCTANAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: TCACTTTGATGTCTA-AGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|18848709|gb|BM567821.1|BM567821
EST:     AGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: AGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|254342710|gb|GR858872.1|GR858872
EST:     AGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: AGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|209725122|gb|BW663062.1|BW663062
EST:     TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: TTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
EST: gi|6724680|gb|AW309013.1|AW309013
EST:     AGAAGCAACCTAAGCGCCAAGAGATTGAAGATAA                         GGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
genomic: AGAAGCAACCTAAGCGCCAAGAGATTGAAGATAAggttacatga ... tttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttcgtgtcttaaataaatgactttgtcttttcaatgtttcgtttcctcccaGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATT
                                      tgtttcgtttcctccc  CT-rich tract
            ttaaataaatgacttt  TA-rich tract