1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGGGAGATTCTGGCTAAACAGTTTGCAAGTTTAGGGGCCAAGCTTATTATCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgttttactggcagctacgtgtgaggtctaaattacttattatattgtgtacaaataatgatatagacacatgccatgctctattaatatgtggtttgcataccacca
species | Glycine max |
transcript | GLYMA18G47960.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|298188014|gb|HO031971.1|HO031971
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCCEST: gi|192305183|gb|FG993949.1|FG993949
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|16347967|gb|BI973562.1|BI973562
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|10845691|gb|BF071167.1|BF071167
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|18848709|gb|BM567821.1|BM567821
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|254342710|gb|GR858872.1|GR858872
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCTEST: gi|209725122|gb|BW663062.1|BW663062
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCCEST: gi|6724680|gb|AW309013.1|AW309013
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
EST: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAA GGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
genomic: TCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgt ... cataccaccaGGTAAGCATGCACCTGATGACGTCAAGATCTTACCATTGGATTTATCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAGATTCTGGCTAAACAGTTTGCAAGTTTAGGGGCCAAGCTTATTATCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAGCTGAAAggtatgttgttttactggcagctacgtgtgaggtctaaattacttattatattgtgtacaaataatgatatagacacatgccatgctctattaatatgtggtttgcataccacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA