1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ggtatctcatagaggagactttcactcctgccatttttttaccaaagctttactttaaaataggttttcccccctttttagtcttctttcaaaacattaaaagtagtcatatgaagtttaatattattcttttctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT
species | Glycine max |
transcript | GLYMA18G47960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|9258099|gb|BE346246.1|BE346246
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|298188014|gb|HO031971.1|HO031971
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|192305184|gb|FG993950.1|FG993950
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: AACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|192305183|gb|FG993949.1|FG993949
genomic: AACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|16347967|gb|BI973562.1|BI973562
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCEST: gi|18848709|gb|BM567821.1|BM567821
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGC
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|254342710|gb|GR858872.1|GR858872
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|209725122|gb|BW663062.1|BW663062
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTEST: gi|6724680|gb|AW309013.1|AW309013
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
tcaaaacattaaaagtagtcatatgaagtttaatattattcttttctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT
gtttaat putative branch site (score: 4)
tattattcttttctcc CT-rich tract
tcatatgaagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatctcatagaggagactttcactcctgccatttttttaccaaagctttactttaaaataggttttcccccctttttagtcttctttcaaaacattaaaagtagtcatatgaagtttaatattattcttttctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGGCATGGTCATTTTGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG