1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ggtattttccatctcaataatatgcattttgtcactgttttacgatttttttggtttattgtactactcgacattgatcgaaatacttgtttgtaacatactgataccatgtacaaataactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCTTTGAGCTTACTGCTCGGAAAAAAGAAGGCCACTTGATGCCCATCTGTT
species | Glycine max |
transcript | GLYMA18G47960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCEST: gi|192305184|gb|FG993950.1|FG993950
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCEST: gi|209725123|gb|BW663063.1|BW663063
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACGTATTCEST: gi|11117943|gb|BF219536.1|BF219536
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCEST: gi|31306857|gb|CD392060.1|CD392060
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCCAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGATACACATATTCEST: gi|5057637|gb|AI736113.1|AI736113
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCEST: gi|9983116|gb|BE657224.1|BE657224
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
EST: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAA GATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
genomic: ATGTATCTCGTTCAGTACATGCCAACTATTGGTTATTGGGTCATGGACAAggtattttcc ... taactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTC
attgatcgaaatacttgtttgtaacatactgataccatgtacaaataactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCTTTGAGCTTACTGCTCGGAAAAAAGAAGGCCACTTGATGCCCATCTGTT
aaataac putative branch site (score: 2)
tacaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattttccatctcaataatatgcattttgtcactgttttacgatttttttggtttattgtactactcgacattgatcgaaatacttgtttgtaacatactgataccatgtacaaataactctgtaGATTGGCAAAAGTCGAGTAGAAGCTGCTGAACAGAAGGGAAACACATATTCTTTGAGCTTACTGCTCGGAAAAAAGAAGGCCACTTGATGCCCATCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG