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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTGTAGAATTGTACTGCATCGCAAAGCCCCATGTTGATCGTGTTCATTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatcatttcacttctttcttctctcttcatttatccttttttattttttatttcgattctaattctctctctctctctctctcttttttttttaatta

Basic information

species Glycine max
transcript GLYMA18G47960.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188014|gb|HO031971.1|HO031971
EST:     TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTAT                         GGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
genomic: TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatca ... tttttaattaGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
EST: gi|192305183|gb|FG993949.1|FG993949
EST:     TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTAT                         GGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
genomic: TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatca ... tttttaattaGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
EST: gi|16347967|gb|BI973562.1|BI973562
EST:     TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTAT                         GGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
genomic: TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatca ... tttttaattaGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
EST: gi|10845691|gb|BF071167.1|BF071167
EST:     TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTAT                         GGCGATTTCACTTTGATGTCTANAGAAGCAACCTAAGCGCCAAGAGATTGA
genomic: TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatca ... tttttaattaGGCGATTTCACTTTGATGTCTA-AGAAGCAACCTAAGCGCCAAGAGATTGA
EST: gi|209725122|gb|BW663062.1|BW663062
EST:     TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTAT                         GGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA
genomic: TTTGCATCTTCCTTTTCTTCATCTTTCTTTACAAGTTCCTCATCGCTTATggtattatca ... tttttaattaGGCGATTTCACTTTGATGTCTAAGAAGCAACCTAAGCGCCAAGAGATTGAA