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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcatagaggagactttcactcctgccatttttttaccaaagctttactttaaaataggttttcccccctttttagtcttctttcaaaacattaaaagtagtcatatgaagtttaatattattcttttctcctgatta

Basic information

species Glycine max
transcript GLYMA18G47960.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726744|gb|AW311098.1|AW311098
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|9258099|gb|BE346246.1|BE346246
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|298188014|gb|HO031971.1|HO031971
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|192305184|gb|FG993950.1|FG993950
EST:     AACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: AACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|192305183|gb|FG993949.1|FG993949
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|16347967|gb|BI973562.1|BI973562
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGC
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGC
EST: gi|18848709|gb|BM567821.1|BM567821
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|254342710|gb|GR858872.1|GR858872
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|209725122|gb|BW663062.1|BW663062
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
EST: gi|6724680|gb|AW309013.1|AW309013
EST:     TAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAA                         GGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT
genomic: GAAAACATCAATTTTAGATGTAACTGAGGAAGGTCTTAAggtatctcat ... ctcctgattaGGCTACCTTTGATGTCAATGTTCTGGGGACAATAACTCTCACAAAGCTCTT