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...atatgtcaacactttagttcagtatgttctgggacagcgttgttcttgttgcttaatgatatatttcattttcatttaactttgtattggcttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATTTTTGTTGGGGATATGTCACCATTTCACTCGGAGGCTGTTCACATGACT
species | Glycine max |
transcript | GLYMA17G34820.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|58018316|gb|CX705058.1|CX705058
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|163926357|gb|EH038463.1|EH038463
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|8826431|gb|BE210161.1|BE210161
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|58015157|gb|CX701899.1|CX701899
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACNTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|58017561|gb|CX704303.1|CX704303
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|58021477|gb|CX708218.1|CX708218
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATEST: gi|192310053|gb|FK000645.1|FK000645
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
EST: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGA GAGACCTGACATAAGTGAAGGGTTGAGAAA-CTACATTGCCGTTCGCTTAT
genomic: GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATTAACGAgtatgattac ... cttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTAT
ttgttgcttaatgatatatttcattttcatttaactttgtattggcttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATTTTTGTTGGGGATATGTCACCATTTCACTCGGAGGCTGTTCACATGACT
atttaac putative branch site (score: 3)
cttct putative PPT
ttaatgatatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtcaacactttagttcagtatgttctgggacagcgttgttcttgttgcttaatgatatatttcattttcatttaactttgtattggcttctaacagGAGACCTGACATAAGTGAAGGGTTGAGAAAACTACATTGCCGTTCGCTTATTTTTGTTGGGGATATGTCACCATTTCACTCGGAGGCTGTTCACATGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - caacact
- - - - - - - - - - - - -gttctgg
- - - - - - - - - - - - - - - - - - - - - - - tgttgct