Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttttgcttccaaaagcattccttgttttttttttttttttccagtgtgttaggttaaaacatagacttttatttgtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995126|gb|CF806715.1|CF806715
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|58018316|gb|CX705058.1|CX705058
EST:     GCATGTGTGGGGTGTTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|163926357|gb|EH038463.1|EH038463
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|207753191|gb|GD724147.1|GD724147
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAAGTTAAAATCTT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATA-GTTAAA-TCTT
EST: gi|192310053|gb|FK000645.1|FK000645
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttccagtgtgttaggttaaaacatagacttttatttgtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG
                        ttaaaacatagacttt  TA-rich tract