1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taaattttgccaaacattgatatctcttaacattttttttttctttttgtcaatgcactgatattctaaccttttgttttcatgcacgtggtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG
species | Glycine max |
transcript | GLYMA17G34820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT ATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCEST: gi|213611599|gb|DB968987.1|DB968987
genomic: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATTgtaagttaaa ... gtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTC
EST: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT ATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCEST: gi|192310053|gb|FK000645.1|FK000645
genomic: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATTgtaagttaaa ... gtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTC
EST: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT ATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCEST: gi|298182342|gb|HO026517.1|HO026517
genomic: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATTgtaagttaaa ... gtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTC
EST: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT ATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTC
genomic: AGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATTgtaagttaaa ... gtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTC
tttgtcaatgcactgatattctaaccttttgttttcatgcacgtggtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG
ttctaac putative branch site (score: 1)
tttcatc putative PPT
atattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattttgccaaacattgatatctcttaacattttttttttctttttgtcaatgcactgatattctaaccttttgttttcatgcacgtggtttcatcagATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG
- - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - -aatgcac