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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttagctctcagcagttgctttccatttagtgacatgaagaaaattgctttagagcatttttcacctaatgttgtcttgacactaagttcctcctagaatggacagattgaaactttgaaagtgagtggtaccttaaccatagaagctgatttatcctctatcttcttgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCT

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995126|gb|CF806715.1|CF806715
EST:     TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG                         TCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
genomic: TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGgtgagtgttt ... tgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
EST: gi|163926357|gb|EH038463.1|EH038463
EST:     TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG                         TCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
genomic: TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGgtgagtgttt ... tgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
EST: gi|192310053|gb|FK000645.1|FK000645
EST:     TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG                         TCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
genomic: TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGgtgagtgttt ... tgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
EST: gi|298182342|gb|HO026517.1|HO026517
EST:     TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG                         TCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC
genomic: TCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGGgtgagtgttt ... tgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtggtaccttaaccatagaagctgatttatcctctatcttcttgttttgcagTCTTAGTGCAGTCATGTGTATGGGAGTAACTGCTGGGGCTTACATTCTTACCTTATTTGCT
                            tttatcctctatcttc  CT-rich tract
                         tgatttat  TA-rich tract