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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTCCTGCTTTCAGGGGTTATTATTTTGTCCCGAGGCATATTACCTTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagctttgtatcttgaagctgtactatagtgttgcatgtatgtttataatttaccaggttccttatcatcttgtgcttttttcaagagttattgcag

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163926357|gb|EH038463.1|EH038463
EST:     TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG                         TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: gi|213611599|gb|DB968987.1|DB968987
EST:     TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG                         TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: gi|192310053|gb|FK000645.1|FK000645
EST:     TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG                         TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: gi|298182342|gb|HO026517.1|HO026517
EST:     TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG                         TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT