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gtctgtagctttgtatcttgaagctgtactatagtgttgcatgtatgtttataatttaccaggttccttatcatcttgtgcttttttcaagagttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG
species | Glycine max |
transcript | GLYMA17G34820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATEST: gi|213611599|gb|DB968987.1|DB968987
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATEST: gi|192310053|gb|FK000645.1|FK000645
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATEST: gi|298182342|gb|HO026517.1|HO026517
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
EST: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAG TTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
genomic: TTCTGCTCCACAATTTCTGCATTTATCATATTAGTCCACCTGGGCATGAGgtctgtagct ... gttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGAT
tttataatttaccaggttccttatcatcttgtgcttttttcaagagttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG
ttttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtagctttgtatcttgaagctgtactatagtgttgcatgtatgtttataatttaccaggttccttatcatcttgtgcttttttcaagagttattgcagTTGGGAGCTGCTGCAATCGATCAAGATCACCCAATTCTTTCTGTAGATGATTTAGCTGATCAAATAGCCGAGGTTCTCAACTTTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT