1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acataaaggcaatggtatataatgaacaatttgttatctgtttctgttaacttcatcatgtgctgttcctgatttttatgctactgatatgtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT
species | Glycine max |
transcript | GLYMA17G34820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGCGATTCACTCTCACTCGACATCGATACCTTTTCTCCTTCACCTCAG GAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAEST: gi|213611599|gb|DB968987.1|DB968987
genomic: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAGgtatataaat ... gtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
EST: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAG GAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAEST: gi|192310053|gb|FK000645.1|FK000645
genomic: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAGgtatataaat ... gtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
EST: GACATCGATTCCTTTTCTCCTTCACCTCAG GAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAEST: gi|208189904|gb|GD990552.1|GD990552
genomic: GACATCGATTCCTTTTCTCCTTCACCTCAGgtatataaat ... gtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
EST: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAG GAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAEST: gi|298182342|gb|HO026517.1|HO026517
genomic: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAGgtatataaat ... gtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
EST: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAG GAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
genomic: CAAGCGATTCACTCTCACTCGACATCGATTCCTTTTCTCCTTCACCTCAGgtatataaat ... gtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGA
gttaacttcatcatgtgctgttcctgatttttatgctactgatatgtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT
tactgat putative branch site (score: 2)
tgtttct CT-rich tract
tgatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataaaggcaatggtatataatgaacaatttgttatctgtttctgttaacttcatcatgtgctgttcctgatttttatgctactgatatgtttctgcagGAACATATCATCAGAACACGTCATGGTTCTGTATCTGTTGCTGTATATGGAGACCAGGATAAGCCAGCTCTAATCACATATCCGGATTTGGCTTTAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - -ggcaatg
- - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctact