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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCGTTCGCTTATTTTTGTTGGGGATATGTCACCATTTCACTCGGAGGCTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaataagttcaattcctattaatatgtgacaacattgtgtaacattgcaaataagcttagaatttaatagccgtggtggaactatag

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995126|gb|CF806715.1|CF806715
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
EST: gi|58018316|gb|CX705058.1|CX705058
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
EST: gi|8826431|gb|BE210161.1|BE210161
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAC                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAG
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAG
EST: gi|58015157|gb|CX701899.1|CX701899
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
EST: gi|31476060|gb|CD418088.1|CD418088
EST:     TTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: TTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
EST: gi|58017561|gb|CX704303.1|CX704303
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
EST: gi|58021477|gb|CX708218.1|CX708218
EST:     CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAG                         GTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA
genomic: CTGTTCACATGACTTCAAAGTTAGACAGACGATTCAGTGCCTTAGTTGAGgtattgaaaa ... ggaactatagGTTCAAGCATGTGGATCAATGGTAACAGAGGAGCAGCCTCATGCCATGTTA