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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcattatttatttatttattcattttcacatggaaactgggttataactggtagctggtttgaagctgaacactagtctgaatctgtttcaatattttcttacag

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995126|gb|CF806715.1|CF806715
EST:     GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|58018316|gb|CX705058.1|CX705058
EST:     GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|163926357|gb|EH038463.1|EH038463
EST:     GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|8826431|gb|BE210161.1|BE210161
EST:     GGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|58015157|gb|CX701899.1|CX701899
EST:     GAGGTGGCACTCATTTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTT-GATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|58017561|gb|CX704303.1|CX704303
EST:     GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
EST: gi|192310053|gb|FK000645.1|FK000645
EST:     GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAAG                         TTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT
genomic: GAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGTCGAAGGgttagtcatt ... tttcttacagTTGTTGGATGAGAGGCAGAGTTTGAATGTGTGGCGATTCCTGGAAGCTATT