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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGTCAAATTTACTATACTTTTATGGCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttttgcttccaaaagcattccttgttttttttttttttttccagtgtgttaggttaaaacatagacttttatttgtgttgatag

Basic information

species Glycine max
transcript GLYMA17G34820.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995126|gb|CF806715.1|CF806715
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|58018316|gb|CX705058.1|CX705058
EST:     GCATGTGTGGGGTGTTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|163926357|gb|EH038463.1|EH038463
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
EST: gi|207753191|gb|GD724147.1|GD724147
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAAGTTAAAATCTT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATA-GTTAAA-TCTT
EST: gi|192310053|gb|FK000645.1|FK000645
EST:     GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAG                         GAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT
genomic: GCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttt ... gtgttgatagGAAATTCGAGGTGGCACTCAATTGCCGGAGTCAGATATAGTTAAATCTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATGTCAAATTTACTATACTTTTATGGCATGTGTGGGGTGGTTAAGGAAATATTGCTGAAGCGGTACTTTAGCAAGgtatgttttttgcttccaaaagcattccttgttttttttttttttttccagtgtgttaggttaaaacatagacttttatttgtgttgatag

- - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG