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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 8
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgta---ggtttcctcactc-tttaatttaaccatatttgacccttttaaga--ttgtaactta-atttacctgttaatggtcattgcttctctcag
  |||||   |||| ||||| || ||  | || |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||| |||||||||||     | || ||| |    |  | |  | || ||  ||   ||    |    ||   | | | | |||   || || |  |    | |   ||
GAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGACCATAATCAACAAGCAGCTTGgtatttactgtcttcaataacctgttatgtctatgttgtactagttgggtaaccagtggttcataataaccaaatattgat--tcaactgttctag

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 6
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaa--gattgtaacttaatttacctgttaatggtcattgcttctctcag
   ||||   | || ||||| || |   | || || ||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||| |||| |||||| |||| | |    ||   |    | |    ||  |||       |||   || || |  |    |||  | | |||                 
GAGCCTATGATCGACGTGAGTTCGAGTCAGTTCTACGGTGAAGGATACGATGACAGTGATAAGAGAATTCCTGACATGACTATAATCAACAAGCAGCTAGgtatgatgtg-catggtggtctgtgggtatgcttgttttccctaactaatggtcagatg-cctactggattatgtag--------------

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 8
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaat--ttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag
|  || ||  | || |||||||| ||||| |||||||| || || |||||||| || |||||||||||||| ||||||||||| || ||| | || |||||||  || |     ||||   |  |||  | | | | ||  |   ||  || |      |  |||       ||| || |  ||       
AGTCCAACGATCGACGTGAGCTCCAAAGAGTTTTATGGAGAAGGTTATGATGACAGCGACAAGAGAATCCCAGACATGACCATCATCAACCGTCAACTTGgtaacttcctcttttcttgtctgattagtcttttctaacagtcacaatgtttttctaataaatactctggtgtggacaataattag-----

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 8
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag-----
|  || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||||||||||||||| ||||||||||| || ||| | || || ||||  | | |  | ||   ||  | |   ||  | |     || | | |  || | ||||    |  | || |   ||    || | |      
AGCCCAACGGTTGATGTTAGCTCCAAAGAGTTTTACGGGGAAGGTTATGATGACAGTGACAAGAGAATCCCAGACATGACCATCATTAACCGCCAACTCGgtaattcttcataatcaccaacatga---tagataatatgctttaaaatcaaaatcaattgctattctgatagaattttggactttgaaaatag

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 8
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag
  ||| || |||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| || |  || |||||||    ||     ||||||  | |  | |  |     |||||  | ||| |    ||||        | |  |   ||    |  |||
GTACCAACTGTTGATGTAAGCTCCAAAGAATTCTATGGTGAAGGATATGATGACAGTGACAAGAGAATTCCAGACATGACCATAATCAATAAACAACTTGgtaatgatctgttttcttta--tcattcctcctctgttcttttgcggttggagtgaaattctgacacaacttttggatggaattgccag

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 8
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag
  ||| || || ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| || |  || |||||||  |  ||    | | |   | |  | |  ||    ||||| || ||| |    ||||            | ||   ||| |  |||
GTACCAACTGTGGATGTAAGCTCCAAAGAATTCTATGGTGAGGGATATGATGACAGTGACAAGAGAATTCCAGACATGACCATAATCAATAAACAACTTGgta--tcgccctgttttctctatcattcctcctttgttcttttgaggttggagtaaaattct----------gacacaacttttgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398396|gb|EV268267.1|EV268267
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|19936465|gb|BQ080876.1|BQ080876
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|254329641|gb|GR839194.1|GR839194
EST:     CCTGACATGACCATAATAAACAAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: CCTGACATGACCATAATAAAC-AGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|6725665|gb|AW310064.1|AW310064
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|208232207|gb|GE031876.1|GE031876
EST:     GACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: GACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|207790158|gb|GD760007.1|GD760007
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|11689003|gb|BF596609.1|BF596609
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|192318503|gb|FK006175.1|FK006175
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|14259260|gb|BG882168.1|BG882168
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|31462304|gb|CD404332.1|CD404332
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|208059191|gb|GD859419.1|GD859419
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|192318504|gb|FK006176.1|FK006176
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|21677747|gb|BQ630098.1|BQ630098
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|15286108|gb|BI469999.1|BI469999
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|6069760|gb|AW099378.1|AW099378
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|15288309|gb|BI472200.1|BI472200
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|254325144|gb|GR834569.1|GR834569
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|22522204|gb|BU081015.1|BU081015
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|8401851|gb|BE057485.1|BE057485
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|22525128|gb|BU083939.1|BU083939
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|7925706|gb|AW831732.1|AW831732
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|15286107|gb|BI469998.1|BI469998
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|120494779|gb|EH222946.1|EH222946
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|254325145|gb|GR834570.1|GR834570
EST:     TAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: TAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|9900689|gb|BE609657.1|BE609657
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|23730358|gb|BU763271.1|BU763271
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|7692189|gb|AW760302.1|AW760302
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|9898918|gb|BE607886.1|BE607886
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|23730721|gb|BU763456.1|BU763456
EST:     TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|7690962|gb|AW759097.1|AW759097
EST:     CTGACATGACCATAATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: CTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|15203309|gb|BI426077.1|BI426077
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|19052926|gb|BM731593.1|BM731593
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|6069764|gb|AW099380.1|AW099380
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|120495764|gb|EH223931.1|EH223931
EST:     CATAGTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|7691411|gb|AW759539.1|AW759539
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|6846283|gb|AW348573.1|AW348573
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|26269066|gb|CA820129.1|CA820129
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|31306989|gb|CD392192.1|CD392192
EST:     AATAAACAGGCAGCTTG                         GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
genomic: AATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: gi|15813933|gb|BI786208.1|BI786208
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|20814809|gb|BQ299287.1|BQ299287
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTATGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|298175667|gb|HO015186.1|HO015186
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|15203277|gb|BI426045.1|BI426045
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|254313743|gb|GR831372.1|GR831372
EST:     CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: gi|20813696|gb|BQ298174.1|BQ298174
EST:     TGTTAGGCAGCTTGCTGAAATAATGATTAAG         
genomic: TGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACCTACCGTTGATGTGAGCTCAAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT