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gtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATATCAGCACAGGACATATGCTGAAGCCGTTAAGAAAGTCATTGCAAAACC
species | Glycine max |
transcript | GLYMA12G08930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|19936465|gb|BQ080876.1|BQ080876
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|254329641|gb|GR839194.1|GR839194
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CCTGACATGACCATAATAAACAAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|6725665|gb|AW310064.1|AW310064
genomic: CCTGACATGACCATAATAAAC-AGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|208232207|gb|GE031876.1|GE031876
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: GACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|207790158|gb|GD760007.1|GD760007
genomic: GACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|11689003|gb|BF596609.1|BF596609
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|192318503|gb|FK006175.1|FK006175
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|14259260|gb|BG882168.1|BG882168
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|31462304|gb|CD404332.1|CD404332
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|208059191|gb|GD859419.1|GD859419
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|192318504|gb|FK006176.1|FK006176
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|21677747|gb|BQ630098.1|BQ630098
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|15286108|gb|BI469999.1|BI469999
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|6069760|gb|AW099378.1|AW099378
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|15288309|gb|BI472200.1|BI472200
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|254325144|gb|GR834569.1|GR834569
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|22522204|gb|BU081015.1|BU081015
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|8401851|gb|BE057485.1|BE057485
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|22525128|gb|BU083939.1|BU083939
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|7925706|gb|AW831732.1|AW831732
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|15286107|gb|BI469998.1|BI469998
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|120494779|gb|EH222946.1|EH222946
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|254325145|gb|GR834570.1|GR834570
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: TAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|9900689|gb|BE609657.1|BE609657
genomic: TAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|23730358|gb|BU763271.1|BU763271
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|7692189|gb|AW760302.1|AW760302
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|9898918|gb|BE607886.1|BE607886
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|23730721|gb|BU763456.1|BU763456
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|7690962|gb|AW759097.1|AW759097
genomic: TGATAGTGACAAGAGAATCCCTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CTGACATGACCATAATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|15203309|gb|BI426077.1|BI426077
genomic: CTGACATGACCATAATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|19052926|gb|BM731593.1|BM731593
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|6069764|gb|AW099380.1|AW099380
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|120495764|gb|EH223931.1|EH223931
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATAGTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|7691411|gb|AW759539.1|AW759539
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|6846283|gb|AW348573.1|AW348573
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|26269066|gb|CA820129.1|CA820129
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|31306989|gb|CD392192.1|CD392192
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: AATAAACAGGCAGCTTG GATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATEST: gi|15813933|gb|BI786208.1|BI786208
genomic: AATAAACAGGCAGCTTGgtaggtttcc ... cttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACAT
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|20814809|gb|BQ299287.1|BQ299287
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTATGCAGCTTGCTGAAATAATGATTAAGEST: gi|298175667|gb|HO015186.1|HO015186
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|15203277|gb|BI426045.1|BI426045
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|254313743|gb|GR831372.1|GR831372
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGEST: gi|20813696|gb|BQ298174.1|BQ298174
genomic: CATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
EST: TGTTAGGCAGCTTGCTGAAATAATGATTAAG
genomic: TGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatga
gacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATATCAGCACAGGACATATGCTGAAGCCGTTAAGAAAGTCATTGCAAAACC
tcattgcttctctc CT-rich tract
ttttaagattgtaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttcctcactctttaatttaaccatatttgacccttttaagattgtaacttaatttacctgttaatggtcattgcttctctcagGATGGAATCCCAAGACTTCACTTTGGGACCTGCTTGAGTCCACTCTGACATATCAGCACAGGACATATGCTGAAGCCGTTAAGAAAGTCATTGCAAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA