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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgatcaagtttctttttattatttgactctactgttagaattttggcatgttgttttgggaattcatgaatcaattgttattccattccattctatatacag

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 7
GAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgatcaagtttctttttattatttgactctactgttagaattttggcatgttgttttgggaattcatgaatcaattgttattccattccattctatatacag
|| || ||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| | ||||||| | | | |      ||   ||||||||  |         ||| |||   | |  |||||||| |  ||  ||  || ||| |||  |||||||||  |     
GATAATCCTGCCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCCAACAATGAGGTTACTGTTAGGCAGCTTGCAGAAATGATGACTGAGgtgaa-taagcga------ttggtttatttgatgc---------aatattgatctttatttttgggactctatatattgat-gtttttc--ttccattcttcag----

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 7
GAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgatcaagtttctttttattatttgactctactgttagaattttggcatgttgttttgggaattcatgaatcaattgttattccattccattctatatacag
|| || |||| |||||| ||||| ||||| || |||||||| |||||||||||||| | ||| |||| ||||||||| ||||| |||| | |||||||    |||  ||  ||||| | ||   |   || | |||  || ||| | |      |  ||| |  ||  ||  |   | | | | ||||||| |  |     
GATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAGgtgaatgagtca--ttggtttttttgatgcaatattaatctta--atcttgacct-----ctatggattctatatattga---tgacttccttccattattcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398396|gb|EV268267.1|EV268267
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|19936465|gb|BQ080876.1|BQ080876
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|7588807|gb|AW704595.1|AW704595
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|11689003|gb|BF596609.1|BF596609
EST:     GCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: GCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|11687703|gb|BF595379.1|BF595379
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTTGAA-CACCTACCGTTGA
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCT-GAAACACCTACCGTTGA
EST: gi|192318503|gb|FK006175.1|FK006175
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|14259260|gb|BG882168.1|BG882168
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|31462304|gb|CD404332.1|CD404332
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|192318504|gb|FK006176.1|FK006176
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|21677747|gb|BQ630098.1|BQ630098
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|11411657|gb|BF423668.1|BF423668
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTTACCGT-GA
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCT-ACCGTTGA
EST: gi|15286108|gb|BI469999.1|BI469999
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|6069760|gb|AW099378.1|AW099378
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15288309|gb|BI472200.1|BI472200
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|254325144|gb|GR834569.1|GR834569
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|13791179|gb|BG653770.1|BG653770
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGNTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|8401851|gb|BE057485.1|BE057485
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|22525128|gb|BU083939.1|BU083939
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15204360|gb|BI427128.1|BI427128
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15286107|gb|BI469998.1|BI469998
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|254325145|gb|GR834570.1|GR834570
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|21887853|gb|BQ741066.1|BQ741066
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|9900689|gb|BE609657.1|BE609657
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|9898918|gb|BE607886.1|BE607886
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15203309|gb|BI426077.1|BI426077
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|19052926|gb|BM731593.1|BM731593
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|6069764|gb|AW099380.1|AW099380
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|120495764|gb|EH223931.1|EH223931
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|7691411|gb|AW759539.1|AW759539
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|6846283|gb|AW348573.1|AW348573
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|13787882|gb|BG650474.1|BG650474
EST:     ACCCAAACAATGAGGTTACTGCTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACCTC-TGAAACACCTACCGTTGA
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAAC-TCCTGAAACACCTACCGTTGA
EST: gi|19268695|gb|BM884951.1|BM884951
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|26269066|gb|CA820129.1|CA820129
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15813933|gb|BI786208.1|BI786208
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|20814809|gb|BQ299287.1|BQ299287
EST:     ACCCAAACAATGAGGTTACTGTTATGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|298175667|gb|HO015186.1|HO015186
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|15203277|gb|BI426045.1|BI426045
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|254313743|gb|GR831372.1|GR831372
EST:     ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: ACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
EST: gi|20813696|gb|BQ298174.1|BQ298174
EST:     TGTTAGGCAGCTTGCTGAAATAATGATTAAG                         GTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT
genomic: TGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgat ... ctatatacagGTTTATTCAAAGGTAAGTGGCGAACAAACTCCTGAAACACCTACCGTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAGgtgaaatgatcaagtttctttttattatttgactctactgttagaattttggcatgttgttttgggaattcatgaatcaattgttattccattccattctatatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT