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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgc------aatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
      | |     |||||||| ||      |    ||    | ||||  || ||||   | |   ||  ||| || | ||||| | |      | ||||    |||| || | ||  ||||| || |||||||| || || || |||||||||||| | ||||  |||||| | ||||||||||| |||||||| ||| | ||||
-----atggagaaaggagcaagtgtaaacctgcccattac-atgtcttaattttgatcacaattgactcttatctgatatttgtgtaccttcaaactttgaaacagGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCATTTTTGGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCAGCTTATTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgt-ttgttgtttctttcttctgatgggattgagctg---atatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
   | | |   || |   || | | |  ||  |  |  | |||| ||| | || || |   |||   ||    |    || || | || |    |||     ||||||| | ||  ||||| || ||||||||    || |||||||| |||||||| ||||| || ||||||||||| ||||| ||||| || ||  | ||||
--agatattcgttcgtgtcacgtggttcttattactacttttgtctctgtgttttgttattatttcactactcaccaatgatgctcgtctt--gtttactacagGATCCTGAATTTTATGTACTCAAAGAAGATATATCCCCTTGCATCTTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCTTGTGCAAAGCAACTTATTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggt-tgtttgttgtttctttcttctgatgggattga--gctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
|| || |   |     | | |  |  | ||||  |  ||| | ||  |    |  | | || || |  | | |    ||||||||||| |    ||     ||||||| || | ||||||||||||||||||    || |||||||| |||||||| ||||| || ||||||||||| ||||| ||||| || ||  ||||||
ctagtctatcac--acacccatagaagcttggaatagttgatattattcgtctaaggttgggttcactgtttactgatgttgtttgtt-gtgcctttctacagGATCCTGCTTTCTATGTTCTTAAAGAAGATATTTCCCCTTGCATATTTGGTTCAATTGAGAAGCAGAGGTGGTCATATGCGTGTGCAAAGCAACTGATTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgtt-gtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
 | |   ||  |||| ||| |  ||| | |  |||||  ||||||  | |||    |    |||   |||     ||   | || ||  |  |  | ||||||||| || |||||| |||| |||||||| |  || || |||||||||||||| ||||| || ||||| ||||| ||||||||||| || || || ||||
-ttgaactgctttggaagctatcgtttgctatttgttctttgttttctgcttgccttattgttggaatgaaccaagtccatatgctttgatatgatattagGATCCAGCTTACTATCTTCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTTCAATTGAGAAGCAGAGATGGTCCTATGCCTGTGCAAAGCAATTAATTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttg-tgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
     | | | |   | ||||   || | |  |||||  ||||||  | ||| || |    ||    |||      ||  |    ||  || || | |||||||||  | |||||||| || |||||||| |  || || |||||||||||| | ||||| || ||||||||||| ||||||||||| || || |||||||
-aaactgtttttgaagcgcaatcatttgctatttgttctttgttttctgcttgtgttattgtttgaatgaatcaaatttgtatactgtgatatgatattagGATCCCACTTACTATGTCCTCAAAGAAGATGCCTCCCCCTGCATTTTTGGTCCGATTGAGAAGCAGAGGTGGTCCTATGCCTGTGCAAAGCAATTGATTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ07025 (Selaginella moellendorffii), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
                 |  |    |     |||  |  | || |   | | |   |     |   ||    ||| || ||  | ||    | | |  |||| |||   ||||| || ||||| || |||||||||||||||||||||||  | ||||| || ||| | ||||| ||||| ||||| || ||| |||| |
-----------------gtgatctctatccagtttctcttcgtctgactttaccttt-----tcttctatcgtgtttttttattctgttcgtggcgacagGACCCGAGTTACTACGTCCTTAAGGAGGACGAGTCTCCTTGCATTTTTGGCCCGATTGAGAAGCAGCGATGGTCGTATGCTTGTGCAAAGCAGCTGATCG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ18978 (Selaginella moellendorffii), 3'ss of exon 3
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
                 |  |    |     |||  |  | || |   | | |   |     |   ||    ||| || ||  | ||    | | |  |||| |||   ||||| || ||||| || |||||||||||||||||||||||  | ||||| || ||| | ||||| ||||| ||||| || ||| |||| |
-----------------gtgatctctatccagtttctcttcgtctgactttaccttt-----tcttctatcgtgtttttttattctgttcgtggcgacagGACCCGAGTTACTACGTGCTTAAGGAGGACGAGTCTCCTTGCATTTTTGGCCCGATTGAGAAGCAGCGATGGTCGTATGCTTGTGCAAAGCAGCTGATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826577|gb|BE210307.1|BE210307
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|254329640|gb|GR839193.1|GR839193
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGG
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCC-GGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGG
EST: gi|193344757|gb|FK313245.1|FK313245
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|4292436|gb|AI437762.1|AI437762
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCT
EST: gi|209721840|gb|BW680026.1|BW680026
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCA
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCA
EST: gi|21677201|gb|BQ629552.1|BQ629552
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|120529417|gb|EH257551.1|EH257551
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|7588807|gb|AW704595.1|AW704595
EST:     GTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: GTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|5606687|gb|AI900785.1|AI900785
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCT
EST: gi|11687703|gb|BF595379.1|BF595379
EST:     GATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: GATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|213593026|gb|DB973499.1|DB973499
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|5666614|gb|AI930650.1|AI930650
EST:     ACGGAAAGACGATTGGAGCCTTTCTTCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAA
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAA
EST: gi|22540365|gb|BU090208.1|BU090208
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTT-GGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|120533375|gb|EH261508.1|EH261508
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|120533338|gb|EH261471.1|EH261471
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|15204360|gb|BI427128.1|BI427128
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|23057703|gb|BU578258.1|BU578258
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|120533391|gb|EH261524.1|EH261524
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGG
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|10233113|gb|BE802058.1|BE802058
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|15204734|gb|BI427502.1|BI427502
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|20812080|gb|BQ296558.1|BQ296558
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|27427518|gb|CA939038.1|CA939038
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|209716222|gb|BW654270.1|BW654270
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|10710707|gb|BF010425.1|BF010425
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGGCCTCTTCGTAAG                         GATCCCGGC-TACTATGTTCTTAAAGAAGACCAGGCTCCCTGCATTTTTGG
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCC-GGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGG
EST: gi|20448618|gb|BQ252742.1|BQ252742
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|15287333|gb|BI471224.1|BI471224
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|20498467|gb|BQ273397.1|BQ273397
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|23057405|gb|BU578079.1|BU578079
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|24135586|gb|BU926096.1|BU926096
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|254313743|gb|GR831372.1|GR831372
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|10234847|gb|BE803735.1|BE803735
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCATAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTGTTAGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: gi|26047224|gb|CA784089.1|CA784089
EST:     ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG                         GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG
                                  tttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctggttttgtattgggagcaagggttggttggttgtttgttgtttctttcttctgatgggattgagctgatatgtgttgtttgtttgcaatttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTTCTATTGAAAAACAGAGGTGGTCTTATGCCTGTGCGAAACAGTTGATTG

- ggttttg
- - - - - -ttgggag
- - - - - - - - - - -gggttgg
- - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc