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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 3'ss of exon 5
gtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttg-tctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
||  || |   | |     | ||  |||   | ||  |   ||| |  |  ||  |     ||| |   ||  | | |||   |  |   | |||||||||| ||  |  | |||||||| || ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||||     ||||||
gtatgtcaaccagtccctttctga-gaataatatacctccatttcgttatggtcgtt----tttctcataagatgtatgtcgccaatgaatttgcagAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G063949_T01 (Zea mays), 3'ss of exon 5
gtcagt-tacttactt-ttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
|| ||| | |||  || ||| |  |    | | | |  || ||||  || |   | || |   ||     || ||   | ||     |   | |||||||||| ||| |  |||||||| | |||||||| || || || ||||| |||||||||||||| ||||| || |||||||| ||||||||  |||||||||
gtaagtgttcttgtttcttggtgaggatcattatcttaattatttatgc-accatgttcagtcttctcagaagatgcacggtaccaatggttttgcagAATCTGCTCCGGAGAGAGCCCTTGAAGCTTGTTGATGGGGGTCAGTCTCAGAGAACCTTTGTCTACATCAAGGATGCTATCGAAGCTGTAGTGCTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G167872_T02 (Zea mays), 3'ss of exon 3
gtcagttacttacttttgctatgttgaa-gtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
      ||  | |  ||| | | ||     ||||  ||  ||  | | |  | ||||| |   | |        |       | | |   | |||||||||| ||| |  |||||||  | |||||||| || || |||||||| |||||||||||||| ||||| || ||||| || ||||||||  |||||||||
-----gtatgtgcacttgtttttttatttattttctgagtatggttggcttaattttgcaccatagcattcttctgagaagatgcatggttttgcagAATCTGCTCCGCCGAGAGCCTTTGAAGCTTGTCGATGGGGGCCAGTCTCAGAGAACCTTTGTATACATCAAGGATGCCATCGAAGCTGTTGTGCTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagt-tacttacttt-tgctatg--ttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
|| ||| |||   |||  | | |||   |||  | ||   |||  |  |||   | |||      |||||| ||   ||| || |      | | | |||||||||||  || | ||||| |||||||||||||| |||||  | || |||||||||||  | ||||| ||||||||||| ||||||||| |  ||||||
gtaagtatacaggcttagtccaatgacctgagttcttctcatggctgcagcttaacttt------tttgtttaa--ctttttggtg---ggtattttcagAATCTTCTGCGACGGGAGCCTCTCAAGCTTGTGGATGGTGGAGAATCACAGAGAACCTTCATCTACATCAAAGATGCTATCGAAGCTGTCCTTTTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctg-cagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
          ||  | | | |     |   | | |    ||  ||| | | || |  |       ||  |  |  |   | |   | | |||  |||||||||||  |  | ||||| ||||||||||| || |||||  | || |||||||| || || ||||| || |||||||||||||||||| |  ||||||
---------gtaagtgttcaaatccaagtatataacccaatgctagtctgtgtatatatgcaagcttttagttaatgcatctctatctatctttcagAATCTTCTACGTCGTGAGCCTCTCAAGCTTGTAGATGGTGGAGAATCACAGAGAACTTTCGTCTACATCAATGATGCTATTGAAGCTGTCCTTTTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 5
gtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
    |||| || |     || |  | |  |||     |  ||||   |    ||||     ||  | |  |  || || |||| ||    |   |||| |||||  |    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||| ||||||
----gttagtttcaacatctgtcataacatttagtagtattttttttct---ttttc----ttactactgatcttgctctttttctcccacaatagAACCTTCTTCGTCATGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTACATAAAGGATGCTATTGAAGCAGTCTTGTTGATGA

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 5
gtcagttacttacttttgctatgttgaagttt-ttagatgattttagccagagttttgaaaatttgttcaaaatttt-ctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
|| |||| |  || | ||  ||      | || || | |  | ||      | ||||     |||||     || || || |||| ||    | | |||| |||||  |  | ||||| |||||||||||||| |||||||| |||||||||||||||||||| || || |||||||||||||| |||||| ||||||
gttagtttca-acatctgtcataacatggcttgtttggtagtatttttttcattttt-----tttgtctctgatcttgctctttttctcccaccgtagAACCTTCTTCGTCGTGAGCCACTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936465|gb|BQ080876.1|BQ080876
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|21677201|gb|BQ629552.1|BQ629552
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGGTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTG
EST: gi|7588807|gb|AW704595.1|AW704595
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|11687703|gb|BF595379.1|BF595379
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|14259260|gb|BG882168.1|BG882168
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|21677747|gb|BQ630098.1|BQ630098
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|11411657|gb|BF423668.1|BF423668
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|15286108|gb|BI469999.1|BI469999
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|6069760|gb|AW099378.1|AW099378
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|15288309|gb|BI472200.1|BI472200
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|120533375|gb|EH261508.1|EH261508
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCC
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCC
EST: gi|13791179|gb|BG653770.1|BG653770
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|8401851|gb|BE057485.1|BE057485
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|22525128|gb|BU083939.1|BU083939
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|15204360|gb|BI427128.1|BI427128
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|23057703|gb|BU578258.1|BU578258
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|15286107|gb|BI469998.1|BI469998
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|21887853|gb|BQ741066.1|BQ741066
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|9898918|gb|BE607886.1|BE607886
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|19052926|gb|BM731593.1|BM731593
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|6069764|gb|AW099380.1|AW099380
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCNGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|13787882|gb|BG650474.1|BG650474
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|19268695|gb|BM884951.1|BM884951
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|26269066|gb|CA820129.1|CA820129
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|15813933|gb|BI786208.1|BI786208
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|20448618|gb|BQ252742.1|BQ252742
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|20814809|gb|BQ299287.1|BQ299287
EST:     TCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|298175667|gb|HO015186.1|HO015186
EST:     GCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: GCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|254313743|gb|GR831372.1|GR831372
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
EST: gi|26047224|gb|CA784089.1|CA784089
EST:     TTGATGGTCCAAGTGAGGGTGTTCCTCCGGTTCTTGCATGCTTTAGCAAT                         AATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG
genomic: TTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTTGCATGCTTTAGCAATgtcagttact ... ttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA
                               ttttctgttttccttt  CT-rich tract
           ttttgaaaatttgttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagttacttacttttgctatgttgaagtttttagatgattttagccagagttttgaaaatttgttcaaaattttctgttttcctttgtctgcagAATCTTCTCAGAGGAGAGCCCCTCAAGCTTGTGGACGGTGGCCAGTCCCAGAGAACCTTTGTTTACATTAAAGATGCTATTGAAGCTGTCTTGCTGATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT