1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttttgaattttattcttgacccgtttcttttttaagagtgtttccagatctgtgcattctgagctgtggttttgcgttttgcattaatttgga...
species | Glycine max |
transcript | GLYMA12G08930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|254329640|gb|GR839193.1|GR839193
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGEST: gi|193344757|gb|FK313245.1|FK313245
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCC-GGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGG
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|4292436|gb|AI437762.1|AI437762
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTEST: gi|209721840|gb|BW680026.1|BW680026
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCAEST: gi|21677201|gb|BQ629552.1|BQ629552
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCA
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|120529417|gb|EH257551.1|EH257551
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|7588807|gb|AW704595.1|AW704595
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: GTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|5606687|gb|AI900785.1|AI900785
genomic: GTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTEST: gi|11687703|gb|BF595379.1|BF595379
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCT
EST: GATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|213593026|gb|DB973499.1|DB973499
genomic: GATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|5666614|gb|AI930650.1|AI930650
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTTCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAEST: gi|22540365|gb|BU090208.1|BU090208
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAA
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTT-GGTEST: gi|120533375|gb|EH261508.1|EH261508
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|120533338|gb|EH261471.1|EH261471
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|15204360|gb|BI427128.1|BI427128
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|23057703|gb|BU578258.1|BU578258
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|120533391|gb|EH261524.1|EH261524
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGGEST: gi|10233113|gb|BE802058.1|BE802058
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|15204734|gb|BI427502.1|BI427502
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|20812080|gb|BQ296558.1|BQ296558
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|27427518|gb|CA939038.1|CA939038
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|209716222|gb|BW654270.1|BW654270
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|10710707|gb|BF010425.1|BF010425
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGGCCTCTTCGTAAG GATCCCGGC-TACTATGTTCTTAAAGAAGACCAGGCTCCCTGCATTTTTGGEST: gi|20448618|gb|BQ252742.1|BQ252742
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCC-GGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGG
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|15287333|gb|BI471224.1|BI471224
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|20498467|gb|BQ273397.1|BQ273397
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|23057405|gb|BU578079.1|BU578079
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|24135586|gb|BU926096.1|BU926096
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|254313743|gb|GR831372.1|GR831372
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGTEST: gi|10234847|gb|BE803735.1|BE803735
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCATAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTGTTAGTEST: gi|26047224|gb|CA784089.1|CA784089
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
EST: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAG GATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
genomic: ACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttt ... tttgtgttagGATCCGGCATACTATGTTCTTAAAGAAGACGAGTCTCCTTGCATTTTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGCGAAGTGTACGGAAAGACGATTGGAGCCTTTCTCCCTAAAGATAGTCCTCTTCGTAAGgtggcctttttgaattttattcttgacccgtttcttttttaagagtgtttccagatctgtgcattctgagctgtggttttgcgttttgcattaatttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG