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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataccttcttttctctttcttttcctctttgttttattttctttacatcgtatcgtttctttctccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 3'ss of exon 1
gtaataataccttcttttctctttcttttcctctttgttttattttctttacatc----gtatcgtttcttt-ctccgtttc-----agACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
       |  || | | |||||  ||  | ||||   ||| | | || || |||      || |    |||   ||||  ||     |||| || || ||||| || || ||||| || || || |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||
------gtctctccctctctctccctcctgctctcaatttcaatctcatttcatttctgataacacgccttgattccggatctgcgtagACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G167872_T01 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------gtaata-ataccttcttttc------tctttcttttcctctttgttttattttctttacatcg--tatcgtttctttctccgt-----ttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
                                                                   ||||   || |  |   |      |  | ||    |||     ||  ||  |||  ||||   |   | | |||     ||     |  |||| || || ||||| || || ||||| || ||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || ||||| |||
gtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G063949_T01 (Zea mays), 3'ss of exon 1
----------------------------------------------------------------gtaata-ataccttcttttctctttcttttcctctttgttt--tattttctttacatcgtatcgtttctttctccgtttca-gACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
                                                                | |||  ||  |   ||  |||     ||||||| |  | |  |    |  |      |  | | |    ||| ||   || ||| || || ||||| || || ||||| || || || |||||||| ||||| || |||||||| |||||||| ||||||||||| ||||| |||
gtcagttagtgcctattcttccacctatcttccttttttctttctcgattgcttactactacttggaatgcatttcgaattgactcacggatttcctcatcctctcctgccatgctgctgctgcttggatctgatctgcgcgccaagACCATAAACCTGGCCGCGATCTGCACGCCGGCCGACTACAACACTCGCCCACTTGACACCATCTACAGCAACTTCATCGACGCACTCCCAGTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 1
-gtaataataccttcttttctctttctt---------ttcctctttgttttattttct-ttacatcgtatcgtttctttctccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
  |  | || || || ||||| ||||||         ||    ||| || |||||| | | |  | ||  |||||  ||      | |||||| | ||||||||||| || || |||||||| || ||||| || || |||||||| || ||||||||||||||||| || || || || |||
gttcgtgattccctcgtttctatttcttgcattggattttgaatttcttgtattttgtatcaatttgtggcgttttctttggtaatgcagACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTG

upper sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 3'ss of exon 1
-gtaataataccttcttttctctttcttttcctctttgttttattttct----------ttacatcgtatcgtttctttctccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
  |  | || ||    ||||| ||||||    |   | ||  ||||  |          | |  | ||  |||||  ||      | |||||||| |||||||| || || || ||||||||||| ||||| || || |||||||| || ||||||||||||||||| || || || || |||
gttcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcagACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCCCTTCCAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826577|gb|BE210307.1|BE210307
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|254329640|gb|GR839193.1|GR839193
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|4292436|gb|AI437762.1|AI437762
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|193500414|gb|FK464435.1|FK464435
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|209721840|gb|BW680026.1|BW680026
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|21677201|gb|BQ629552.1|BQ629552
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|6502082|gb|AW203455.1|AW203455
EST:     CATCAAACACGAACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: CATCAAACACGA-CTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|120529417|gb|EH257551.1|EH257551
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|213593026|gb|DB973499.1|DB973499
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|5666614|gb|AI930650.1|AI930650
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|22540365|gb|BU090208.1|BU090208
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|120533375|gb|EH261508.1|EH261508
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|120533338|gb|EH261471.1|EH261471
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|120533391|gb|EH261524.1|EH261524
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGGCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|213610339|gb|DB962953.1|DB962953
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|208190909|gb|GD989597.1|GD989597
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|10233113|gb|BE802058.1|BE802058
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|15204734|gb|BI427502.1|BI427502
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|15337580|gb|BI498236.1|BI498236
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|20812080|gb|BQ296558.1|BQ296558
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|27427518|gb|CA939038.1|CA939038
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|209716222|gb|BW654270.1|BW654270
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|10710707|gb|BF010425.1|BF010425
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATTTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|20448618|gb|BQ252742.1|BQ252742
EST:     GCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: GCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|15287333|gb|BI471224.1|BI471224
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|20498467|gb|BQ273397.1|BQ273397
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|23057405|gb|BU578079.1|BU578079
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|24135586|gb|BU926096.1|BU926096
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|10234847|gb|BE803735.1|BE803735
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
EST: gi|26047224|gb|CA784089.1|CA784089
EST:     ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTC                         ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT
genomic: ACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac ... tccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcctctttgttttattttctttacatcgtatcgtttctttctccgtttcagACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG
                                tatcgtttctttctcc  CT-rich tract
         tttgttttattttctt  TA-rich tract