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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaactacttcactaactacccgttctaattgcaaatgtgaattgttgaatcttgaatgatttgagttcgattcgacgtcgtttcgttcttttttgtag

Basic information

species Glycine max
transcript GLYMA12G08930.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaactacttcactaactacccgttctaattgcaaatgtgaattgttgaatcttgaatgatttgagttcg-attcgacgtcgtttcgttcttttttgtag
|| || || ||||| || || ||||| || || || |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||     |  |||| | |        ||||  ||     | |  |    | | |   ||||  ||   |  ||  |  || || |    |             
ACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTGgtaatccctcctcttctccactccagatttcttcttcttcttttctaccact-agtgcagaattgttgatggacgtgtgtgatgt-gcacag-------------

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaactacttcactaactacccgttctaattgcaaatgtgaattgttgaatcttgaatgatttgagttcgattcgacgtcgtttcgttcttttttgtag
|| || || ||||| || || ||||| || ||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || ||||| |||||         |  |   |   |  |  |||  | | ||          | |||  | ||  ||||    |  || |||  | || || | |||||||  |   
ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTGgtcggcccttgatctttttttttcgcatttcctactaca----------gctga--catggctgat----gaccgtttc--cttccttcccttcttttcag---

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G063949_T01 (Zea mays), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgta-acttaactacttcactaactacccgttctaattgcaaatgtgaat-tgttga-atcttgaatgatttgagttcgattcgacgtcgtttcgttcttttttgtag
|| || || ||||| || || ||||| || || || |||||||| ||||| || |||||||| |||||||| ||||||||||| ||||| ||||||   ||| |||||  |  | |  |       ||   |||    |||  |||  |  ||    || | |     ||   || |                       
ACCATAAACCTGGCCGCGATCTGCACGCCGGCCGACTACAACACTCGCCCACTTGACACCATCTACAGCAACTTCATCGACGCACTCCCAGTGgtacgattacctact--atcagcatcatcacacaaacacaagacagaacatgtcaatgtcactcatcactcactctcctgtccag----------------------

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgta---acttaactacttcactaactacccgttctaattg--caaatgtgaattgttgaa------tcttgaatgatttgagttcgattcg--acgtcgtttcgttcttttttgtag-------
|| || ||||| ||||| || || ||||| || |||||||| || || ||||| ||||| || |||||||||||||| || || ||||| ||||||   | || |    ||  |    |    | | || | |  ||| | || |   ||||       | ||   ||||  |  ||  | | |  || | |  | ||  ||  || | |       
ACGATAAATCTAGCTGCGATCTGTACTCCAGCAGATTACAATACGCGTCCTCTTGACACTATCTACAGCAATTTCATTGATGCTCTCCCAGTGgtatgtattttatgcttttgcagtttgtttggtttagtggagcaattttgtaagtttgaggaatatttttatgtgatacggattttagttgtgacattgagtggtcattggttttggtatgtag

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaac---ttaactacttcactaactacccgttctaattgcaaatgtga----attgttgaatcttgaatgatttgagttcgattcgacgtcgtttcgttcttttttgtag--------
||||| |||||||| || || || ||||||||||| ||||| || || |||||||| || ||||||||||||||||| || || || || ||||||     ||   | |||   | |  |  |||| |  |  |||   | |     |||||   | ||   |   | |        | || |  | |  |   |||  ||| |        
ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCCCTTCCAGTGgtatgctgttggatgcttgtttga--attcgttttcgtc-caaggataatattgttgttagtttttttgtttctcggaaatctgttgaagctgatgtgcgttttgatgtggctctttag

upper sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 2
ACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgta-act------taactacttcactaactacccgttctaat-tgcaaatgtgaattgt-----tgaatcttg--aatgatttgagttcgattcg-acgtcgtttcgttcttttttgtag--------
||| | ||||||||||| || || |||||||| || ||||| || || |||||||| || ||||||||||||||||| || || || || ||||||  ||      |   |  || | | | |   ||||| ||  |     ||| | ||||     ||  ||| |  |||   ||||    |||     ||| | || |   |||  ||| |        
ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTGgtatgctgttggatgtttgtttgaattatttttcgttcaaagataatgttgttatttgtctttttgtttctcggaaatctgttgaagctgatgtatgcgttgatttgcgttttgatgtggctttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826577|gb|BE210307.1|BE210307
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|254329640|gb|GR839193.1|GR839193
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|193344757|gb|FK313245.1|FK313245
EST:     CGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|4292436|gb|AI437762.1|AI437762
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|193500414|gb|FK464435.1|FK464435
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTT
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTT
EST: gi|209721840|gb|BW680026.1|BW680026
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|21677201|gb|BQ629552.1|BQ629552
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|6502082|gb|AW203455.1|AW203455
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTT
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTT
EST: gi|120529417|gb|EH257551.1|EH257551
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|5606687|gb|AI900785.1|AI900785
EST:     CATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|213593026|gb|DB973499.1|DB973499
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|5666614|gb|AI930650.1|AI930650
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|22540365|gb|BU090208.1|BU090208
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|120533375|gb|EH261508.1|EH261508
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|120533338|gb|EH261471.1|EH261471
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|120533391|gb|EH261524.1|EH261524
EST:     CCCGGCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|208190909|gb|GD989597.1|GD989597
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTA
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTA
EST: gi|10233113|gb|BE802058.1|BE802058
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|15204734|gb|BI427502.1|BI427502
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|15337580|gb|BI498236.1|BI498236
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACA-CAAGCGCCTTA
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTA
EST: gi|20812080|gb|BQ296558.1|BQ296558
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|27427518|gb|CA939038.1|CA939038
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|209716222|gb|BW654270.1|BW654270
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|10710707|gb|BF010425.1|BF010425
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|20448618|gb|BQ252742.1|BQ252742
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|15287333|gb|BI471224.1|BI471224
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|20498467|gb|BQ273397.1|BQ273397
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|23057405|gb|BU578079.1|BU578079
EST:     CCCGCCCTCTCGACACCATTTTTTGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|24135586|gb|BU926096.1|BU926096
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|10234847|gb|BE803735.1|BE803735
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
EST: gi|26047224|gb|CA784089.1|CA784089
EST:     CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTG                         GTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC
genomic: CCCGCCCTCTCGACACCATTTACAGCAATTTCATCGACGCGCTCCCCGTGgtaacttaac ... ttttttgtagGTGAAATACTGTTCCGAGAACAACAAGCGCCTTATCCATTTCTCTACTTGC