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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtccagaccaatcagactgacttgtctgacgtgtcgccgcgcactctcatccccttccccctctatccccttccccctctctcctacccacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTGGGCGACGCCTGGCCGCGGCAGTCGGACCTGAGTTCGCTGCGCGTGCTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467332|gb|BP095245.1|BP095245
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|10788393|gb|AV626113.1|AV626113
EST:     TGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: TGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|10792112|gb|AV629478.1|AV629478
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCT
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCT
EST: gi|49470841|gb|BP098702.1|BP098702
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|10788133|gb|AV644805.1|AV644805
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|49462702|gb|BP090615.1|BP090615
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|49468808|gb|BP096669.1|BP096669
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|49465039|gb|BP092952.1|BP092952
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTG
EST: gi|10784406|gb|AV641078.1|AV641078
EST:     CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAG                         GTGCGCCAGTTCTACAC
genomic: CCACACACCCCGACGGCGGCCGCGCCTGGCGCATGGTGGAGCGGTACAAGgtgggtggga ... cacactgcagGTGCGCCAGTTCTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctcatccccttccccctctatccccttccccctctctcctacccacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTGGGCGACGCCTGGCCGCGGCAGTCGGACCTGAGTTCGCTGCGCGTGCTGG
       ccccttccccctctat  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aggtccagaccaatcagactgacttgtctgacgtgtcgccgcgcactctcatccccttccccctctatccccttccccctctctcctacccacactgcagGTGCGCCAGTTCTACACGGCCCCCACGCTGCTTCGCTCGCTGCTGCAGCTGGGCGACGCCTGGCCGCGGCAGTCGGACCTGAGTTCGCTGCGCGTGCTGG

- - - agaccaa
- - - - - - - -agactga
- - - - - - - - - - - -ttgtctg