1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gctgaggccgtggcgtgcaagcttcccaacacgccaccgccttcgcacctcgcgtttaccacatgccgcatgcatcccccttctcccctcctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTGCCCAAGACCCGCAGTGGCAAGATAATGCGCCGCGTGCTGCGCAAGATT
species | Chlamydomonas reinhardtii |
transcript | EDO97232 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAA GAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTEST: gi|161803429|gb|FC088599.1|FC088599
genomic: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAAgtgagcattg ... ctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCT
EST: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCATGTGCGCAA GAGCATCGGCCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTEST: gi|239841062|gb|GR282752.1|GR282752
genomic: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAAgtgagcattg ... ctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCT
EST: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAA GAGCATCGGTCCCTTCGCTGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTEST: gi|161803016|gb|FC090266.1|FC090266
genomic: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAAgtgagcattg ... ctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCT
EST: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCATGTGCGCAA GAGCATCGGCCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCT
genomic: GTGCAGACCAGCGACGCCATGCGCAAGTTGCTCATGGACCACGTGCGCAAgtgagcattg ... ctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCT
cacctcgcgtttaccacatgccgcatgcatcccccttctcccctcctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTGCCCAAGACCCGCAGTGGCAAGATAATGCGCCGCGTGCTGCGCAAGATT
catgcatcccccttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaggccgtggcgtgcaagcttcccaacacgccaccgccttcgcacctcgcgtttaccacatgccgcatgcatcccccttctcccctcctccgctcagGAGCATCGGTCCCTTCGCGGTGCCCGAGGTGATCCATTGGGCGCCGGGGCTGCCCAAGACCCGCAGTGGCAAGATAATGCGCCGCGTGCTGCGCAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - acacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgcc