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...tgcacccaaccacccacgggtcaccctcaccgcacacacaccgcgccctcgccccacacccacacccatacccaccgacctcgccccctctcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGCTGCAGCTCCGTGATCATGGGCGGCATACCCACACACCCCGACGGCGGC
species | Chlamydomonas reinhardtii |
transcript | EDO97232 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|10792112|gb|AV629478.1|AV629478
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|10793873|gb|AV631239.1|AV631239
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCEST: gi|10787916|gb|AV644588.1|AV644588
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCC
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|10788133|gb|AV644805.1|AV644805
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|49462702|gb|BP090615.1|BP090615
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: CGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|49468808|gb|BP096669.1|BP096669
genomic: CGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|49465039|gb|BP092952.1|BP092952
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGEST: gi|10784406|gb|AV641078.1|AV641078
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
EST: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTG CGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
genomic: TACCTGTACGACATGCGGCCCGGCGACGTGGTGTTCACCACCGCCGACTGgtgagggggg ... tcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGG
ccctcgccccacacccacacccatacccaccgacctcgccccctctcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGCTGCAGCTCCGTGATCATGGGCGGCATACCCACACACCCCGACGGCGGC
ccgacctcgccccctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacccaaccacccacgggtcaccctcaccgcacacacaccgcgccctcgccccacacccacacccatacccaccgacctcgccccctctcctccgcagCGGCTGGATCACGGGCCACTCCTACCTGGCCTACGGCCCGCTGCTGTGCGGCTGCAGCTCCGTGATCATGGGCGGCATACCCACACACCCCGACGGCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- -acccaac
- - - - - cacccac
- - - - - - - - - - - accctca
- - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataccca