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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGTGCTGTGCCTGGAGGTGGCCAACGCACTGGCTGCCGCCGACACGCCCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggagagggaggcaggggcagggggcgcggcaaggggcggtgggcagggggcgggggcgcggctgttgggcgagggctggagtgtgagccggacaggaggtgctgggggatcaggggccgatgtacatgctttgcttgtttcgtatgctcacacccccgccccaacccctcgcccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469783|gb|BP097644.1|BP097644
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGG
EST: gi|10792296|gb|AV629662.1|AV629662
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|49468921|gb|BP096782.1|BP096782
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTC
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTC
EST: gi|10792112|gb|AV629478.1|AV629478
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|10793873|gb|AV631239.1|AV631239
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|10787916|gb|AV644588.1|AV644588
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|10790255|gb|AV627621.1|AV627621
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|10788133|gb|AV644805.1|AV644805
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
EST: gi|10784406|gb|AV641078.1|AV641078
EST:     CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAG                         TCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG
genomic: CCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggaga ... tcgcccgcagTCTGCGGAGTGCGAGCCCACCTGGCTGGACTCCGAGGACCGCTCCTTCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTGTGCTGTGCCTGGAGGTGGCCAACGCACTGGCTGCCGCCGACACGCCCTGGAACCCCGTGCGGGACGTGTGGTGGCACGCAGCCGTCCCCATGCAGgtgagggagagggaggcaggggcagggggcgcggcaaggggcggtgggcagggggcgggggcgcggctgttgggcgagggctggagtgtgagccggacaggaggtgctgggggatcaggggccgatgtacatgctttgcttgtttcgtatgctcacacccccgccccaacccctcgcccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG