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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaggccgggctgcgctgcgctgcgttgcgggactgctgccacccctctttgctcccgtgcacccctcccagagcgtcctgtatctcgccacctccgcccttgccgcccgtgccaagccctacctcacatctctccccgcttcactcccccttgtccccccccccccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGCCTGCGCGCGTGTGGGCGCGGTGCACTCGGTGGTGTTTGCGGGCTTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469783|gb|BP097644.1|BP097644
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10794130|gb|AV631496.1|AV631496
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10783469|gb|AV640141.1|AV640141
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCG
EST: gi|10785817|gb|AV642489.1|AV642489
EST:     TCCAACTGGCTCAAGTCGCGCGGCTGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGC-GTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10792296|gb|AV629662.1|AV629662
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785185|gb|AV641857.1|AV641857
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCT
EST: gi|49469873|gb|BP097734.1|BP097734
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49468921|gb|BP096782.1|BP096782
EST:     GCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: GCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10786901|gb|AV643573.1|AV643573
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49469203|gb|BP097064.1|BP097064
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10783594|gb|AV640266.1|AV640266
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785877|gb|AV642549.1|AV642549
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCC
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCC
EST: gi|10783605|gb|AV640277.1|AV640277
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|6547733|gb|AV393517.1|AV393517
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCAT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCAT
EST: gi|49469296|gb|BP097157.1|BP097157
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10783202|gb|AV639874.1|AV639874
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10789106|gb|AV626826.1|AV626826
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49469378|gb|BP097239.1|BP097239
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49467406|gb|BP095319.1|BP095319
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49469116|gb|BP096977.1|BP096977
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49470022|gb|BP097883.1|BP097883
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10784477|gb|AV641149.1|AV641149
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10792019|gb|AV629385.1|AV629385
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10783578|gb|AV640250.1|AV640250
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49470129|gb|BP097990.1|BP097990
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49469654|gb|BP097515.1|BP097515
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49465462|gb|BP093375.1|BP093375
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10786939|gb|AV643611.1|AV643611
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785712|gb|AV642384.1|AV642384
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCT
EST: gi|49470705|gb|BP098566.1|BP098566
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCC
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCC
EST: gi|10790628|gb|AV627994.1|AV627994
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATG
EST: gi|49470446|gb|BP098307.1|BP098307
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49465538|gb|BP093451.1|BP093451
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785729|gb|AV642401.1|AV642401
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGG
EST: gi|49467038|gb|BP094951.1|BP094951
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10790255|gb|AV627621.1|AV627621
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|49467056|gb|BP094969.1|BP094969
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10792354|gb|AV629720.1|AV629720
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785553|gb|AV642225.1|AV642225
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10784428|gb|AV641100.1|AV641100
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|6548010|gb|AV393794.1|AV393794
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|239841061|gb|GR282751.1|GR282751
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10788334|gb|AV626054.1|AV626054
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCT
EST: gi|10783687|gb|AV640359.1|AV640359
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: gi|10785883|gb|AV642555.1|AV642555
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCC
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCC
EST: gi|10786424|gb|AV643096.1|AV643096
EST:     TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG                         CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCC-GCCGCCAT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacctcacatctctccccgcttcactcccccttgtccccccccccccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGCCTGCGCGCGTGTGGGCGCGGTGCACTCGGTGGTGTTTGCGGGCTTCAG
  acctcac  putative branch site (score: 3)
          tctctccccgcttcac  CT-rich tract