1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggccgggctgcgctgcgctgcgttgcgggactgctgccacccctctttgctcccgtgcacccctcccagagcgtcctgtatctcgccacctccgcccttgccgcccgtgccaagccctacctcacatctctccccgcttcactcccccttgtccccccccccccctgacag
species | Chlamydomonas reinhardtii |
transcript | EDO97232 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10794130|gb|AV631496.1|AV631496
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10783469|gb|AV640141.1|AV640141
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGEST: gi|10785817|gb|AV642489.1|AV642489
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCG
EST: TCCAACTGGCTCAAGTCGCGCGGCTGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10792296|gb|AV629662.1|AV629662
genomic: TCCAACTGGCTCAAGTCGCGCGGC-GTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785185|gb|AV641857.1|AV641857
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTEST: gi|49469873|gb|BP097734.1|BP097734
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCT
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49468921|gb|BP096782.1|BP096782
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: GCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10786901|gb|AV643573.1|AV643573
genomic: GCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49469203|gb|BP097064.1|BP097064
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10783594|gb|AV640266.1|AV640266
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785877|gb|AV642549.1|AV642549
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCEST: gi|10783605|gb|AV640277.1|AV640277
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCC
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|6547733|gb|AV393517.1|AV393517
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATEST: gi|49469296|gb|BP097157.1|BP097157
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCAT
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10783202|gb|AV639874.1|AV639874
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10789106|gb|AV626826.1|AV626826
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49469378|gb|BP097239.1|BP097239
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49467406|gb|BP095319.1|BP095319
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49469116|gb|BP096977.1|BP096977
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49470022|gb|BP097883.1|BP097883
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10784477|gb|AV641149.1|AV641149
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10792019|gb|AV629385.1|AV629385
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10783578|gb|AV640250.1|AV640250
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49470129|gb|BP097990.1|BP097990
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49469654|gb|BP097515.1|BP097515
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49465462|gb|BP093375.1|BP093375
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10786939|gb|AV643611.1|AV643611
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785712|gb|AV642384.1|AV642384
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTEST: gi|49470705|gb|BP098566.1|BP098566
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCT
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCEST: gi|10790628|gb|AV627994.1|AV627994
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCC
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGEST: gi|49470446|gb|BP098307.1|BP098307
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49465538|gb|BP093451.1|BP093451
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785729|gb|AV642401.1|AV642401
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGEST: gi|49467038|gb|BP094951.1|BP094951
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10790255|gb|AV627621.1|AV627621
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|49467056|gb|BP094969.1|BP094969
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10792354|gb|AV629720.1|AV629720
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785553|gb|AV642225.1|AV642225
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10784428|gb|AV641100.1|AV641100
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|6548010|gb|AV393794.1|AV393794
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|239841061|gb|GR282751.1|GR282751
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10788334|gb|AV626054.1|AV626054
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTEST: gi|10783687|gb|AV640359.1|AV640359
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCT
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGGEST: gi|10785883|gb|AV642555.1|AV642555
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCATGCTGG
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCEST: gi|10786424|gb|AV643096.1|AV643096
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCC
EST: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG CCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCC-GCCGCCAT
genomic: TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggcc ... cccctgacagCCGTGACCATCTACCTGCCCATGGTCCCCGAGCTCCCCGCCGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGgtgagaggccgggctgcgctgcgctgcgttgcgggactgctgccacccctctttgctcccgtgcacccctcccagagcgtcctgtatctcgccacctccgcccttgccgcccgtgccaagccctacctcacatctctccccgcttcactcccccttgtccccccccccccctgacag
- - - - - - - - - - - - - AAGAAG