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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGCAAATGGTTCCAGGCCAAGGCCGGCAGCGCAGGTGTGCCCTTCTTCGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcggtggggcgttgggtgggtgcttgggatggttggggagcggccagggcgcggctgtgcatttgcgtgtgggctgcacgcggctggctaggaatgcagcagtgtttgcggtgtgtcgctgacacggcggtggctgatgaccggttcccccctcctccccccgccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6546389|gb|AV392173.1|AV392173
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|49468514|gb|BP096375.1|BP096375
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|49468891|gb|BP096752.1|BP096752
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|49470802|gb|BP098663.1|BP098663
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|10775321|gb|AV632001.1|AV632001
EST:     CGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|49468210|gb|BP096071.1|BP096071
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|239841062|gb|GR282752.1|GR282752
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
EST: gi|10788278|gb|AV644950.1|AV644950
EST:     CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCA                         CCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA
genomic: CGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcgg ... cgccccgcagCCACGGAGGCGGAGGGCGTGCTGGCTCTGCGCGGCGTGTGGCCGGGCATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTGCAAATGGTTCCAGGCCAAGGCCGGCAGCGCAGGTGTGCCCTTCTTCGGCGTATGCCCCGTGGTGCTGGACCCGACCACCGGCAACGAGATCTGCAgtgagtgcggtggggcgttgggtgggtgcttgggatggttggggagcggccagggcgcggctgtgcatttgcgtgtgggctgcacgcggctggctaggaatgcagcagtgtttgcggtgtgtcgctgacacggcggtggctgatgaccggttcccccctcctccccccgccccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC