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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCGCGGCGAGCAGGCGGCACTCATCTGGGAGGGCAACGACGAGAACGAGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattatcaagcggcttggtttttctggatttggagtttgggtgttgaggtttgggggctggcagagggcagtttacacgggctaggtaccgctgcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469783|gb|BP097644.1|BP097644
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10791671|gb|AV629037.1|AV629037
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10786608|gb|AV643280.1|AV643280
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCG
EST: gi|10794366|gb|AV631732.1|AV631732
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10794130|gb|AV631496.1|AV631496
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10783469|gb|AV640141.1|AV640141
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785817|gb|AV642489.1|AV642489
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCTGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGC-GTCAAGAAGGGCGATG
EST: gi|10792296|gb|AV629662.1|AV629662
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786890|gb|AV643562.1|AV643562
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGA
EST: gi|10785098|gb|AV641770.1|AV641770
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGC
EST: gi|10786781|gb|AV643453.1|AV643453
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGCCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGCCG
EST: gi|10785185|gb|AV641857.1|AV641857
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49469873|gb|BP097734.1|BP097734
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786901|gb|AV643573.1|AV643573
EST:     CAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: CAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10793684|gb|AV631050.1|AV631050
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10786790|gb|AV643462.1|AV643462
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTC
EST: gi|49469203|gb|BP097064.1|BP097064
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786431|gb|AV643103.1|AV643103
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10786380|gb|AV643052.1|AV643052
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGC
EST: gi|10783594|gb|AV640266.1|AV640266
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785877|gb|AV642549.1|AV642549
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10783605|gb|AV640277.1|AV640277
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|6547733|gb|AV393517.1|AV393517
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49469296|gb|BP097157.1|BP097157
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10787760|gb|AV644432.1|AV644432
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAA
EST: gi|10783202|gb|AV639874.1|AV639874
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10789106|gb|AV626826.1|AV626826
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49469378|gb|BP097239.1|BP097239
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49467406|gb|BP095319.1|BP095319
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785853|gb|AV642525.1|AV642525
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCA
EST: gi|10783045|gb|AV639717.1|AV639717
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAA
EST: gi|6549665|gb|AV395449.1|AV395449
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10788765|gb|AV626485.1|AV626485
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCA
EST: gi|49469116|gb|BP096977.1|BP096977
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10794451|gb|AV631817.1|AV631817
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|49470022|gb|BP097883.1|BP097883
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10791198|gb|AV628564.1|AV628564
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|10784477|gb|AV641149.1|AV641149
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10792019|gb|AV629385.1|AV629385
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786265|gb|AV642937.1|AV642937
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGC
EST: gi|10783578|gb|AV640250.1|AV640250
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49467175|gb|BP095088.1|BP095088
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTC
EST: gi|49470129|gb|BP097990.1|BP097990
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49469654|gb|BP097515.1|BP097515
EST:     GCGCCGCACCGCTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: GCGCCGCACCG-TCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49465462|gb|BP093375.1|BP093375
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786939|gb|AV643611.1|AV643611
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785712|gb|AV642384.1|AV642384
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786211|gb|AV642883.1|AV642883
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|6548734|gb|AV394518.1|AV394518
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAG
EST: gi|49466048|gb|BP093961.1|BP093961
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCG
EST: gi|49465870|gb|BP093783.1|BP093783
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTC
EST: gi|49470705|gb|BP098566.1|BP098566
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10790628|gb|AV627994.1|AV627994
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49470446|gb|BP098307.1|BP098307
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49465538|gb|BP093451.1|BP093451
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785110|gb|AV641782.1|AV641782
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGG
EST: gi|10785729|gb|AV642401.1|AV642401
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49467038|gb|BP094951.1|BP094951
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49467548|gb|BP095461.1|BP095461
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCCGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAA
EST: gi|10790255|gb|AV627621.1|AV627621
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|49467056|gb|BP094969.1|BP094969
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10792354|gb|AV629720.1|AV629720
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10784647|gb|AV641319.1|AV641319
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCG
EST: gi|49470532|gb|BP098393.1|BP098393
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785553|gb|AV642225.1|AV642225
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10784428|gb|AV641100.1|AV641100
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10787793|gb|AV644465.1|AV644465
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCA
EST: gi|6548010|gb|AV393794.1|AV393794
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|239841061|gb|GR282751.1|GR282751
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10788334|gb|AV626054.1|AV626054
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10787333|gb|AV644005.1|AV644005
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGA
EST: gi|10783687|gb|AV640359.1|AV640359
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|6548777|gb|AV394561.1|AV394561
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTC
EST: gi|10785883|gb|AV642555.1|AV642555
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10786424|gb|AV643096.1|AV643096
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATG
EST: gi|10785826|gb|AV642498.1|AV642498
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGC
EST: gi|6548811|gb|AV394595.1|AV394595
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGT
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGT
EST: gi|10785235|gb|AV641907.1|AV641907
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGC
EST: gi|10794071|gb|AV631437.1|AV631437
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTTGCCGAGGTCAACAGGCTG                         TCCAACTGGCTC
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTC
EST: gi|6550704|gb|AV396488.1|AV396488
EST:     AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTG                         TCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGCCGTGA
genomic: AGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattat ... acacccgcagTCCAACTGGCTCAAGTCGCGCGGCGTCAAGAAGGGCGATGCCGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGCGCGGCGAGCAGGCGGCACTCATCTGGGAGGGCAACGACGAGAACGAGCGCCGCACCGTCAGTTACCGGGAGCTGCTGGCCGAGGTCAACAGGCTGgtgagattatcaagcggcttggtttttctggatttggagtttgggtgttgaggtttgggggctggcagagggcagtttacacgggctaggtaccgctgcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgt