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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCGCCATGCTGGCCTGCGCGCGTGTGGGCGCGGTGCACTCGGTGGTGTTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtgggagcgagggcgggggacaggcacatgggagggggcagagggaatgcgcaggcgggggaggaaggaaatggaagaggcttgtgtgcctgagcc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97232
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469783|gb|BP097644.1|BP097644
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10794130|gb|AV631496.1|AV631496
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10785817|gb|AV642489.1|AV642489
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
genomic: TT-GCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: gi|10792296|gb|AV629662.1|AV629662
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49469873|gb|BP097734.1|BP097734
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49468921|gb|BP096782.1|BP096782
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10788099|gb|AV644771.1|AV644771
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10786901|gb|AV643573.1|AV643573
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGC
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGC
EST: gi|49469203|gb|BP097064.1|BP097064
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGC
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGC
EST: gi|10783605|gb|AV640277.1|AV640277
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49469296|gb|BP097157.1|BP097157
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10789106|gb|AV626826.1|AV626826
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10793873|gb|AV631239.1|AV631239
EST:     CTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: CTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10784477|gb|AV641149.1|AV641149
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: gi|10792019|gb|AV629385.1|AV629385
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: gi|10783578|gb|AV640250.1|AV640250
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACC
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACC
EST: gi|49470129|gb|BP097990.1|BP097990
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49469654|gb|BP097515.1|BP097515
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49465462|gb|BP093375.1|BP093375
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10786939|gb|AV643611.1|AV643611
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGAC
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGAC
EST: gi|49470446|gb|BP098307.1|BP098307
EST:     TTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCTGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGC-GCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49465538|gb|BP093451.1|BP093451
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49467038|gb|BP094951.1|BP094951
EST:     TTGCGGGCTTCAGCTGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CTGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCG
genomic: TTGCGGGCTTCAGC-GCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagC-GCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCG
EST: gi|10790255|gb|AV627621.1|AV627621
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|49467056|gb|BP094969.1|BP094969
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTG
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTG
EST: gi|10792354|gb|AV629720.1|AV629720
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10785553|gb|AV642225.1|AV642225
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|10784428|gb|AV641100.1|AV641100
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|6548010|gb|AV393794.1|AV393794
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: gi|239841061|gb|GR282751.1|GR282751
EST:     TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA                         CGCCNAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCCGCCATGCTGGCCTGCGCGCGTGTGGGCGCGGTGCACTCGGTGGTGTTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtgggagcgagggcgggggacaggcacatgggagggggcagagggaatgcgcaggcgggggaggaaggaaatggaagaggcttgtgtgcctgagcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc