1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aggacaaacaaggccgcctttcctgcccgtcatttccaccgtacctctcccgctcacacctcccctggccctcgtacccccatccccacccccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTGCTGCTCAAGACCATTGCGGACGACGCCGTCAAGCTGGCAGCCAAGGCC
species | Chlamydomonas reinhardtii |
transcript | EDO97232 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10794130|gb|AV631496.1|AV631496
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10785817|gb|AV642489.1|AV642489
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGEST: gi|10792296|gb|AV629662.1|AV629662
genomic: TT-GCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49469873|gb|BP097734.1|BP097734
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49468921|gb|BP096782.1|BP096782
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10788099|gb|AV644771.1|AV644771
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10786901|gb|AV643573.1|AV643573
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCEST: gi|49469203|gb|BP097064.1|BP097064
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGC
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCEST: gi|10783605|gb|AV640277.1|AV640277
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGC
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49469296|gb|BP097157.1|BP097157
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10789106|gb|AV626826.1|AV626826
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10793873|gb|AV631239.1|AV631239
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: CTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10784477|gb|AV641149.1|AV641149
genomic: CTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGEST: gi|10792019|gb|AV629385.1|AV629385
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGEST: gi|10783578|gb|AV640250.1|AV640250
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCG
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCEST: gi|49470129|gb|BP097990.1|BP097990
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACC
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49469654|gb|BP097515.1|BP097515
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49465462|gb|BP093375.1|BP093375
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10786939|gb|AV643611.1|AV643611
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACEST: gi|49470446|gb|BP098307.1|BP098307
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGAC
EST: TTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCTGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49465538|gb|BP093451.1|BP093451
genomic: TTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGC-GCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49467038|gb|BP094951.1|BP094951
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTGCGGGCTTCAGCTGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CTGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGEST: gi|10790255|gb|AV627621.1|AV627621
genomic: TTGCGGGCTTCAGC-GCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagC-GCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCG
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|49467056|gb|BP094969.1|BP094969
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGEST: gi|10792354|gb|AV629720.1|AV629720
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTG
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10785553|gb|AV642225.1|AV642225
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|10784428|gb|AV641100.1|AV641100
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|6548010|gb|AV393794.1|AV393794
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTEST: gi|239841061|gb|GR282751.1|GR282751
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
EST: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAA CGCCNAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
genomic: TTTGCGGGCTTCAGCGCCGACAGCCTGGCGCAGCGCATGGTGGACTGCAAgtgagtggga ... cccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGT
tctcccgctcacacctcccctggccctcgtacccccatccccacccccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTGCTGCTCAAGACCATTGCGGACGACGCCGTCAAGCTGGCAGCCAAGGCC
cgctcac putative branch site (score: 3)
ccctcgtacccccatc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggacaaacaaggccgcctttcctgcccgtcatttccaccgtacctctcccgctcacacctcccctggccctcgtacccccatccccacccccctcacagCGCCAAGGTGCTTCTGACCGCCACGGGCGTCATGCGCGGTACCAAGCCCGTGCTGCTCAAGACCATTGCGGACGACGCCGTCAAGCTGGCAGCCAAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcccca