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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTACACGCAGAGATCGAGAGAGACTTAGAGATTGAAGATGGTAGTGAAAATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATGgtgagatattgcatcttttcactctatatatataagttcctacagagtcatcattgtacctgaaaggaatatttatttgagcaattag

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124735744|gb|EH827146.1|EH827146
EST:     AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATG                         GGAGGAGGGAGCAATCA
genomic: AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATGgtgagatatt ... gagcaattagGGAGGAGGGAGCAATCA
EST: gi|116378121|gb|EG420713.1|EG420713
EST:     AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATG                         GGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT
genomic: AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATGgtgagatatt ... gagcaattagGGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT
EST: gi|116378124|gb|EG420716.1|EG420716
EST:     AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATG                         GGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT
genomic: AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATGgtgagatatt ... gagcaattagGGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT
EST: gi|116378122|gb|EG420714.1|EG420714
EST:     AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATG                         GGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT
genomic: AATGATCCTCGTTCTTATCTGACTTATTTAAAAACCAGGCCTACTTCATGgtgagatatt ... gagcaattagGGAGGAGGGAGCAATCAGAAACCTATTATCGGTTACTGAAAACACAAGAAT