1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtattcaagagttcaagcagtagaagcactagaatttggttgtatctcattacatattttttttgtctttggatggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTACCTAGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAAT
species | Arabidopsis thaliana |
transcript | AT4G04955.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG GAAGCAAAAGGCEST: gi|124821478|gb|EH906344.1|EH906344
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGC
EST: TTCCTTGGATTTGATAAAG GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTACEST: gi|116378124|gb|EG420716.1|EG420716
genomic: TTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
EST: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTACEST: gi|116378122|gb|EG420714.1|EG420714
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
EST: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
ctagaatttggttgtatctcattacatattttttttgtctttggatggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTACCTAGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAAT
tatctcattacatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcaagagttcaagcagtagaagcactagaatttggttgtatctcattacatattttttttgtctttggatggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTACCTAGCTTTCTCAGCCGAAGAGATTCCAGAAGGTGATACTCGTTTCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA