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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTTATGTGCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttcttgagtcttatgatccttctctcatgattcaatagttattacaaaaacctcattggcccttgtctcgctgatactgtttgtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04955.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G173413_T01 (Zea mays), 5'ss of exon 8
TCCTTTATGTGCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttcttgagtc-ttatgatccttctctcatgattcaa--tagttattacaaaaacctcattggcccttgtctcgctgatactgtttgtttatgcag
|| ||||||||||| ||||| |||||||| ||||| ||||||||    ||||||||  | || |  |   ||   || ||||  |   |   | ||  ||  |  |  || |||   ||   |   |||   || |||      || |||       || ||
TCTTTTATGTGCCCCTCAGGCATCAACGACTTTCCCATGACAAATTCAACTCATATCGAAgtatgctgcattatttccttattttagattattaattttttcaattttttcttatggaatatttgatgggt-ttatct------taatgtccaacactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164168845|gb|ES171369.1|ES171369
EST:     TGACAAACATCACTCATATAAAG                         GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
genomic: TGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: gi|116378121|gb|EG420713.1|EG420713
EST:     GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG                         GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: gi|116378124|gb|EG420716.1|EG420716
EST:     GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG                         GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: gi|116378122|gb|EG420714.1|EG420714
EST:     GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG                         GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA