1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgtttttttcttttgaatcagaatcagaatccatctgttgcttcatcaacttgtacacactcatgattcgaacttaggtcacttgttctccaagcca...
species | Arabidopsis thaliana |
transcript | AT4G04955.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG TGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGCEST: gi|116378121|gb|EG420713.1|EG420713
genomic: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgttttt ... tgttgatcagTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGC
EST: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG TGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGCEST: gi|124781433|gb|EH871376.1|EH871376
genomic: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgttttt ... tgttgatcagTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGC
EST: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG TGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGEST: gi|124856304|gb|EH940741.1|EH940741
genomic: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgttttt ... tgttgatcagTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAG
EST: CATCTCTGGTTCTG TGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGCEST: gi|124932709|gb|EL009942.1|EL009942
genomic: CATCTCTGGTTCTGgtacgttttt ... tgttgatcagTGGAGGTGAAGGGAGGAATTATTGTGTCGGTGGTGAAGGAAGTTGATTGGC
EST: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG TGGAGGTGAAGGGAAGGAATTATTGTGTCGGTGGTGAAGGAAGTTG
genomic: GATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgttttt ... tgttgatcagTGGAGGTGAAGGGA-GGAATTATTGTGTCGGTGGTGAAGGAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTGgtacgtttttttcttttgaatcagaatcagaatccatctgttgcttcatcaacttgtacacactcatgattcgaacttaggtcacttgttctccaagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcatc